suba logo
AT5G01890.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich receptor-like protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G56370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01890-MONOMEReggNOG:COG4886eggNOG:ENOG410IG0XEMBL:AF424563EMBL:AL162351EMBL:BT004520EMBL:CP002688
EMBL:FJ708767EnsemblPlants:AT5G01890EnsemblPlants:AT5G01890.1entrez:831677Gene3D:3.80.10.10GeneID:831677Genevisible:Q9LZV7
GO:GO:0004672GO:GO:0005524GO:GO:0005886GO:GO:0016021Gramene:AT5G01890.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF112
HOGENOM:HOG000116551IntAct:Q9LZV7InterPro:IPR000719InterPro:IPR001245InterPro:IPR001611InterPro:IPR003591InterPro:IPR011009
InterPro:IPR013210InterPro:IPR017441InterPro:IPR032675KEGG:ath:AT5G01890ncoils:CoilOMA:NIWILTSPaxDb:Q9LZV7
Pfam:PF00560Pfam:PF07714Pfam:PF08263Pfam:PF13855Pfam:Q9LZV7Pfscan:PS50011PhylomeDB:Q9LZV7
PIR:T48210PRO:PR:Q9LZV7PROSITE:PS00107PROSITE:PS50011ProteinModelPortal:Q9LZV7Proteomes:UP000006548RefSeq:NP_195809.1
scanprosite:PS00107SMART:SM00369SMR:Q9LZV7STRING:3702.AT5G01890.1SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT5G01890TMHMM:TMhelixUniGene:At.4740UniProt:Q9LZV7
Coordinates (TAIR10) chr5:-:341661..344650
Molecular Weight (calculated) 104185.00 Da
IEP (calculated) 6.08
GRAVY (calculated) 0.06
Length 967 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNGAVSLLF LFLAVVSARA DPTFNDDVLG LIVFKAGLDD PLSKLSSWNS EDYDPCNWVG CTCDPATNRV SELRLDAFSL SGHIGRGLLR LQFLHTLVLS
101: NNNLTGTLNP EFPHLGSLQV VDFSGNNLSG RIPDGFFEQC GSLRSVSLAN NKLTGSIPVS LSYCSTLTHL NLSSNQLSGR LPRDIWFLKS LKSLDFSHNF
201: LQGDIPDGLG GLYDLRHINL SRNWFSGDVP SDIGRCSSLK SLDLSENYFS GNLPDSMKSL GSCSSIRLRG NSLIGEIPDW IGDIATLEIL DLSANNFTGT
301: VPFSLGNLEF LKDLNLSANM LAGELPQTLS NCSNLISIDV SKNSFTGDVL KWMFTGNSES SSLSRFSLHK RSGNDTIMPI VGFLQGLRVL DLSSNGFTGE
401: LPSNIWILTS LLQLNMSTNS LFGSIPTGIG GLKVAEILDL SSNLLNGTLP SEIGGAVSLK QLHLHRNRLS GQIPAKISNC SALNTINLSE NELSGAIPGS
501: IGSLSNLEYI DLSRNNLSGS LPKEIEKLSH LLTFNISHNN ITGELPAGGF FNTIPLSAVT GNPSLCGSVV NRSCLSVHPK PIVLNPNSSN PTNGPALTGQ
601: IRKSVLSISA LIAIGAAAVI AIGVVAVTLL NVHARSSVSR HDAAAALALS VGETFSCSPS KDQEFGKLVM FSGEVDVFDT TGADALLNKD SELGRGGFGV
701: VYKTSLQDGR PVAVKKLTVS GLIKSQEEFE REMRKLGKLR HKNVVEIKGY YWTQSLQLLI HEFVSGGSLY RHLHGDESVC LTWRQRFSII LGIARGLAFL
801: HSSNITHYNM KATNVLIDAA GEAKVSDFGL ARLLASALDR CVLSGKVQSA LGYTAPEFAC RTVKITDRCD VYGFGILVLE VVTGKRPVEY AEDDVVVLCE
901: TVREGLEEGR VEECVDPRLR GNFPAEEAIP VIKLGLVCGS QVPSNRPEME EVVKILELIQ CPSHDLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)