AT4G29450.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.860 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: root hair specific 16 (TAIR:AT4G29180.2); Has 136974 Blast hits to 122023 proteins in 4538 species: Archae - 125; Bacteria - 13867; Metazoa - 43814; Fungi - 10104; Plants - 50658; Viruses - 384; Other Eukaryotes - 18022 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:14478837..14482626 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96562.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 863 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRANLVFGIF CALVTTILVH GQDQSGYISI DCGIPPYDTP EDTMTNINYV SDEAFITTGV NFKVSEEYGY PKNPVLLSTL AEVRAFPQGN RNCYTLKLSQ 101: GKDHLYLIRA SFMYGNYDGK KALPEFDLYV NVNFWSTVKF KNASDQVTKE ILSFAESDTI YVCLVNKGKG TPFISGLELR PVNSSIYGTE FGRNVSLVLY 201: RRWDIGYLNG TGRYQDDRFD RIWSPYSSNI SWNSIITSGY IDVFQNGYCP PDEVIKTAAA PENVDDPLEL FWTSDDPNVR FYAYLYFAEL ETLEKNETRK 301: IKILWNGSPV SETSFEPSSK YSTTFSNPRA FTGKDHWISI QKTVDSTLPP ILNAIEIFTA QSLDEFSTTI EDIHAIESIK ATYKVNKVWS GDPCSPRLFP 401: WEGVGCSDNN NNHQIKSLNL SSSGLLGPIV LAFRNLSLLE SLDLSNNDLQ QNVPEFLADL KHLKVLNLKG NNFTGFIPKS LMKKLKAGLL TLSADEQNLC 501: NSCQEKKKKK SMVVPIAVAA SVIVLVVVLV IIWIILRQRK KGAYSGPLLP SGKRRFTYNE VSSITNNFNK VIGKGGFGIV YLGSLEDGTK IAVKMINDSS 601: LAKPKGTSSS SLSRASNQFQ VEAELLLTVH HRNLASFVGY CDDDRSMALI YEYMANGNLQ AYLSSENAED LSWEKRLHIA IDSAQGLEYL HDGCRPAIVH 701: RDVKTANILI NDNLEAKIAD FGLSKVFPED DLSHVVTTVM GTPGYVDPEY YRTFVLNEKS DVYSFGVVLL ELITGQRAII KTEEGDNISV IHYVWPFFEA 801: RELDGVVDPL LRGDFSQDSA WKFVDVAMSC VRDKGSNRPT MNQIVAELKQ CLAAELDREP QSQ |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)