AT1G49490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19020.1); Has 490010 Blast hits to 170242 proteins in 4186 species: Archae - 1140; Bacteria - 94180; Metazoa - 157463; Fungi - 74619; Plants - 89182; Viruses - 10398; Other Eukaryotes - 63028 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18317563..18320106 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90993.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||
| Length | 847 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERPFGCFFI LLLISYTVVA TFDDEPSFPE NADLTKDLEQ KCFSINKVDP NLKFENDRLK RAYIALQAWK KAIYSDPFKT TANWVGSDVC SYNGVYCAPA 101: LDDDSLTVVA GVDLNHADIA GHLPPELGLM TDLALFHINS NRFCGIIPKS LSKLALMYEF DVSNNRFVGQ FPEVSLSWPS LKFLDLRYNE FEGSLPSEIF 201: DKDLDAIFLN NNRFESVIPG TIGKSKASVV TFANNKFSGC IPKSIGNMKN LNEIVFTGNN LTGCFPNEIG LLNNVTVFDA SKNGFVGSLP STLSGLASVE 301: QLDLSHNKLT GFVVDKFCKL PNLDSFKFSY NFFNGEAESC VPGRNNGKQF DDTNNCLQNR PSQKPAKQCL PVVSRPVDCS KDKCSGGSNG GSSPSPNPPR 401: TSEPKPSKPE PVMPKPSDSS KPETPKTPEQ PSPKPQPPKH ESPKPEEPEN KHELPKQKES PKPQPSKPED SPKPEQPKPE ESPKPEQPQI PEPTKPVSPP 501: NEAQGPTPDD PYDASPVKNR RSPPPPKVED TRVPPPQPPM PSPSPPSPIY SPPPPVHSPP PPVYSSPPPP HVYSPPPPVA SPPPPSPPPP VHSPPPPPVF 601: SPPPPVFSPP PPSPVYSPPP PSHSPPPPVY SPPPPTFSPP PTHNTNQPPM GAPTPTQAPT PSSETTQVPT PSSESDQSQI LSPVQAPTPV QSSTPSSEPT 701: QVPTPSSSES YQAPNLSPVQ APTPVQAPTT SSETSQVPTP SSESNQSPSQ APTPILEPVH APTPNSKPVQ SPTPSSEPVS SPEQSEEVEA PEPTPVNPSS 801: VPSSSPSTDT SIPPPENNDD DDDGDFVLPP HIGFQYASPP PPMFQGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)