AT1G62440.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : leucine-rich repeat/extensin 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
leucine-rich repeat/extensin 2 (LRX2); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat/extensin 1 (TAIR:AT1G12040.1); Has 394418 Blast hits to 112735 proteins in 3055 species: Archae - 811; Bacteria - 65245; Metazoa - 131456; Fungi - 52175; Plants - 95400; Viruses - 7676; Other Eukaryotes - 41655 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:23111818..23115293 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89808.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.77 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 826 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESSDDCFIQ LEVSVRLGVN DLLSFENYRT SFPWDSYSGL DGFFHLGAVD DEGNLTEIGQ LMNLEIRGDD DDDDISDDNI KVDPSLKFEN PSLRQAYIAL 101: QSWKQAIFSD PFNFTANWNG SDVCSYNGIF CAPSPSSPKT RVVAGIDLNH ADMAGYLPRE LGLLTDLALF HLNSNRFCGE VPLTFKHMKL LFELDLSNNR 201: FVGKFPNVVL SLPSLKFLDL RYNEFEGSIP SKLFDKELDA IFLNHNRFMF GIPENMGNSP VSALVLADND LGGCIPGSIG LMGKTLNEII LSNDNLTGCL 301: PPQIGNLKNV TVFDISFNRL SGPLPSSIGN MKSLEQLNVA NNRFTGVIPS SICQLSNLEN FTYSSNFFTG DAPRCVALLG DNVVVNGSMN CIDGKEDQRS 401: SKECSSPASR SVDCSKFGCN NFFSPPPPSF KMSPTVRVLP PPPPSSKMSP TFRATPPPPS SKMSPSFRAT PPPPSSKMSP SFRATPPPPS SKMSPSVKAY 501: PPPPPPPEYE PSPPPPSSEM SPSVRAYPPP PPLSPPPPSP PPPYIYSSPP PPSPSPPPPY IYSSPPPVVN CPPTTQSPPP PKYEQTPSPR EYYPSPSPPY 601: YQYTSSPPPP TYYATQSPPP PPPPTYYAVQ SPPPPPPVYY PPVTASPPPP PVYYTPVIQS PPPPPVYYSP VTQSPPPPPP VYYPPVTQSP PPSPVYYPPV 701: TQSPPPPPVY YLPVTQSPPP PSPVYYPPVA KSPPPPSPVY YPPVTQSPPP PSTPVEYHPP ASPNQSPPPE YQSPPPKGCN DSPSNDHHYQ TPTPPSLPPP 801: YYEDTPLPPI RGVSYASPPP PSIPYY |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)