AT2G15880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G33970.1); Has 436796 Blast hits to 106000 proteins in 3186 species: Archae - 830; Bacteria - 85977; Metazoa - 139472; Fungi - 51372; Plants - 100247; Viruses - 9779; Other Eukaryotes - 49119 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:6918039..6920319 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78374.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||
| Length | 727 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPHIYKQPLG IFQGFVPTLT DAEVSFIAQR QLLTLPENGE LPDDIEYEVD LKVTFANHRL KRAYIALQAW KKAVYSDPFN TTGNWHGPHV CGYTGVFCAP 101: ALDDPDVAVV AGVDLNGADI AGHLPAELGL MTDVAMFHLN SNRFCGIIPK SFEKLSLMHE FDVSNNRFVG PFPSVVLSWP AVKFIDVRYN DFEGQVPPEL 201: FKKDLDAIFL NNNRFTSTIP DSLGESSASV VTFAHNKFSG CIPRSIGNMK NLNEIIFKDN SLGGCFPSEI GKLANVNVFD ASMNSFTGVL PPSFVGLTSM 301: EEFDISGNKL TGFIPENICK LPKLVNLTYA YNYFNGQGDS CVPGSQKQIA LDDTRNCLPD RPKQRSAKEC AVVISRPVDC SKDKCAGGSS QATPSKSPSP 401: VPTRPVHKPQ PPKESPQPND PYNQSPVKFR RSPPPPQQPH HHVVHSPPPA SSPPTSPPVH STPSPVHKPQ PPKESPQPND PYDQSPVKFR RSPPPPPVHS 501: PPPPSPIHSP PPPPVYSPPP PPPVYSPPPP PPVYSPPPPP PVHSPPPPVH SPPPPVHSPP PPVHSPPPPV HSPPPPVHSP PPPVYSPPPP PVHSPPPPVH 601: SPPPPVHSPP PPVYSPPPPP PVHSPPPPVF SPPPPVHSPP PPVYSPPPPV YSPPPPPVKS PPPPPVYSPP LLPPKMSSPP TQTPVNSPPP RTPSQTVEAP 701: PPSEEFIIPP FIGHQYASPP PPMFQGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)