AT4G13340.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 637879 Blast hits to 129296 proteins in 3596 species: Archae - 1468; Bacteria - 134638; Metazoa - 215120; Fungi - 74599; Plants - 120849; Viruses - 14592; Other Eukaryotes - 76613 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:7758610..7760892 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82250.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 760 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKTIQILLF FFFLINLTNA LSISSDGGVL SDNEVRHIQR RQLLEFAERS VKITVDPSLN FENPRLRNAY IALQAWKQAI LSDPNNFTSN WIGSNVCNYT 101: GVFCSPALDN RKIRTVAGID LNHADIAGYL PEELGLLSDL ALFHVNSNRF CGTVPHRFNR LKLLFELDLS NNRFAGKFPT VVLQLPSLKF LDLRFNEFEG 201: TVPKELFSKD LDAIFINHNR FRFELPENFG DSPVSVIVLA NNRFHGCVPS SLVEMKNLNE IIFMNNGLNS CLPSDIGRLK NVTVFDVSFN ELVGPLPESV 301: GEMVSVEQLN VAHNMLSGKI PASICQLPKL ENFTYSYNFF TGEAPVCLRL PEFDDRRNCL PGRPAQRSPG QCKAFLSRPP VNCGSFSCGR SVSPRPPVVT 401: PLPPPSLPSP PPPAPIFSTP PTLTSPPPPS PPPPVYSPPP PPPPPPPVYS PPPPPPPPPP PPVYSPPPPP PPPPPPPPVY SPPPPSPPPP PPPVYSPPPP 501: PPPPPPPPVY SPPPPPVYSS PPPPPSPAPT PVYCTRPPPP PPHSPPPPQF SPPPPEPYYY SSPPPPHSSP PPHSPPPPHS PPPPIYPYLS PPPPPTPVSS 601: PPPTPVYSPP PPPPCIEPPP PPPCIEYSPP PPPPVVHYSS PPPPPVYYSS PPPPPVYYSS PPPPPPVHYS SPPPPEVHYH SPPPSPVHYS SPPPPPSAPC 701: EESPPPAPVV HHSPPPPMVH HSPPPPVIHQ SPPPPSPEYE GPLPPVIGVS YASPPPPPFY |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)