AT1G21310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : extensin 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes extensin 3. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
extensin 3 (EXT3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: extensin 4 (TAIR:AT1G76930.1); Has 148545 Blast hits to 27416 proteins in 1232 species: Archae - 272; Bacteria - 19294; Metazoa - 56539; Fungi - 24663; Plants - 25187; Viruses - 4465; Other Eukaryotes - 18125 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7453693..7454988 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49178.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 431 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSPMASLVA TLLVLTISLT FVSQSTANYF YSSPPPPVKH YTPPVKHYSP PPVYHSPPPP KKHYEYKSPP PPVKHYSPPP VYHSPPPPKK HYVYKSPPPP 101: VKHYSPPPVY HSPPPPKKHY VYKSPPPPVK HYSPPPVYHS PPPPKKHYVY KSPPPPVKHY SPPPVYHSPP PPKKHYVYKS PPPPVKHYSP PPVYHSPPPP 201: KKHYVYKSPP PPVKHYSPPP VYHSPPPPKK HYVYKSPPPP VKHYSPPPVY HSPPPPKKHY VYKSPPPPVK HYSPPPVYHS PPPPKKHYVY KSPPPPVKHY 301: SPPPVYHSPP PPKKHYVYKS PPPPVKHYSP PPVYHSPPPP KKHYVYKSPP PPVKHYSPPP VYHSPPPPKK HYVYKSPPPP VKHYSPPPVY HSPPPPKEKY 401: VYKSPPPPPV HHYSPPHHPY LYKSPPPPYH Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)