AT1G23720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.921 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: hypocotyl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G13390.1); Has 541802 Blast hits to 61860 proteins in 2130 species: Archae - 1218; Bacteria - 96253; Metazoa - 194950; Fungi - 87318; Plants - 78001; Viruses - 13090; Other Eukaryotes - 70972 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8388655..8391342 | ||||||||||||||||||||
| Molecular Weight (calculated) | 99667.30 Da | ||||||||||||||||||||
| IEP (calculated) | 9.67 | ||||||||||||||||||||
| GRAVY (calculated) | -1.16 | ||||||||||||||||||||
| Length | 895 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAASYEPYT YSSPPPPLYD SPTPKVDYKS PPPPYVYSSP PPPLSYSPSP KVDYKSPPPP YVYSSPPPPY YSPSPKVEYK SPPPPYVYSS PPPPYYSPSP 101: KVDYKSPPPP YVYSSPPPPY YSPSPKPTYK SPPPPYVYNS PPPPYYSPSP KVEYKSPPPP YVYSSPPPPY YSPSPKVDYK SPPPPYVYNS PPPPYYSPSP 201: KPTYKSPPPP YIYSSPPPPY YSPSPKPVYK SPPPPYVYSS PPPPYYSPSP KPAYKSPPPP YVYSSPPPPY YSPSPKPIYK SPPPPYVYNS PPPPYYSPSP 301: KPAYKSPPPP YVYSFPPPPY YSPSPKPVYK SPPPPYVYNS PPPPYYSPSP KPAYKSPPPP YVYSSPPPPY YSPSPKPTYK SPPPPYVYSS PPPPYYSPSP 401: KPVYKSPPPP YIYNSPPPPY YSPSPKPSYK SPPPPYVYSS PPPPYYSPSP KLTYKSSPPP YVYSSPPPPY YSPSPKVVYK SPPPPYVYSS PPPPYYSPSP 501: KPSYKSPPPP YVYNSPPPPY YSPSPKVIYK SPPHPHVCVC PPPPPCYSHS PKIEYKSPPT PYVYHSPPPP PYYSPSPKPA YKSSPPPYVY SSPPPPYYSP 601: APKPVYKSPP PPYVYNSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP TPKPTYKSPP PPYVYSSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP 701: APKPTYKSPP PPYVYSSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPPYYS PSPKVEYKSP PPPYVYSSPP PPYYSPSPKV EYKSPPPPYV YSSPPPPPYY 801: SPSPKVEYKS PPPPYVYSSP PPPTYYSPSP KVEYKSPPPP YVYNSPPPPA YYSPSPKIEY KSPPPPYVYS SPPPPSYSPS PKAEYKSPPP PSLYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)