AT1G76930.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : extensin 4 | ||||||||
| Curator Summary (TAIR10) |
Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness. | ||||||||
| Computational Description (TAIR10) |
extensin 4 (EXT4); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: extensin 3 (TAIR:AT1G21310.1); Has 70571 Blast hits to 25422 proteins in 1351 species: Archae - 162; Bacteria - 9676; Metazoa - 26960; Fungi - 9190; Plants - 12813; Viruses - 2187; Other Eukaryotes - 9583 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr1:-:28895449..28896853 | ||||||||
| Molecular Weight (calculated) | 32939.60 Da | ||||||||
| IEP (calculated) | 10.15 | ||||||||
| GRAVY (calculated) | -0.58 | ||||||||
| Length | 293 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAPMASFLV LAFSLAFVSQ TTANYFYSSP PPPVKHYSPP PVYKSPPPPV KHYSPPPVYK SPPPPVKHYS PPPVYKSPPP PVKYYSPPPV YKSPPPPVYK 101: SPPPPVKHYS PPPVYKSPPP PVKHYSPPPV YKSPPPPVKH YSPPPVYKSP PPPVKHYSPP PSYTTLHHHR FTTHLLQSYT TLHHHRFTTH LLQLYTTPHH 201: HPRSTTNTNL LLLRTPLLTS TPTLPLQITT SSSLLDYLIV SNGVDDDTQE NKESFGDIIK DTRSLTGELK RIHMSKEKVS HFNVFSLFIN TLL |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)