AT5G28400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.950 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28320.1); Has 2580 Blast hits to 2028 proteins in 270 species: Archae - 20; Bacteria - 158; Metazoa - 939; Fungi - 198; Plants - 144; Viruses - 14; Other Eukaryotes - 1107 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10344024..10348234 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 109874.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.88 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||
| Length | 973 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAETKAKRLL KVEIRFSFLV PIRFTNKSDD SEGLKDRVAD DSNLLNELED WVARICKISY SGSFAHRDTV KYLIKMNAWE LVISVFSAWY CGICSNPIFT 101: VYLDSVGNVA KVEVDEDEVL SRRRSGLDDL ESVSSKLVYA KKLAEQMENG EYVTHKDTSL LKFVSSSSSS SSEEEFRFVS SIQNAILRLD LIPKLPAIGR 201: ALLFGYIGLW LLKTVLVYRK SNEVECTELE KEMMRRKMKA WEERDMSEKG TVEVLHKEGL EKPLMSFEKP KFDRNELMSS ISKVKGSEKK LELVNSSHVE 301: LDFDDKIHEI KVMARRAREI EAGIELNEKE KRDVNKETGD SDEDISIQSQ KSLPHDGLTH SVGDDDKDER LGTSTDSENT ELSAFAVPML NGAMVDSGFP 401: NHEMAASDKK KVSNVVPLVP TDGVIQASDV TKDQLSMMKN STGRKSRVIR SVKEAKEFLS RRSGEKELTQ ELSQMAQDSD EIFPKQSDEE RGVARKHKLD 501: VDSQPQKNDY QKLSETGNAV KGSSSNKREE LKSAKSSSGG TEHIEKEEPS GKENWIEKTT MNLSLERETQ EPGTIADIAE LYRSEYNDEL EWMKDEKLRD 601: IVFCVRDNEL AGRDPSHLID AEDKAIFLQS LEKKVEKENE KLSHLHHVYD PLEKIIPRWK GPSLDKNPEF LNNYHEQREA LFSGKAASVS PVKYEEQSSH 701: QELSESASSE NTLTPSSEIT SSQPKIVVEG SDGSVRPGKK SGKEYWQHTK KWSRGFLELY NAETDPEVKA VMRDMGKDLD RWITEDEIKD AADIMEKLPE 801: RNKKFMEKKL NKLKREMELF GPQAVMLSVL FKVYGAMVDS GFPEHEIAAS DKEKVSNLVP LVPTHGIIQS SEAEYCGICS NPIFTVYLDS VGNVAKVEVD 901: EDEVLSRRSG LDDLELVSSR LQKVLEDQIS GLDKLVQLQA KFKNALEEAV LAENGVENNC RDAEISCPDS SAP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)