AT5G28320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.948 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28400.1); Has 1861 Blast hits to 1522 proteins in 246 species: Archae - 19; Bacteria - 134; Metazoa - 673; Fungi - 145; Plants - 123; Viruses - 8; Other Eukaryotes - 759 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10301936..10306142 | ||||||||||||||||||||
| Molecular Weight (calculated) | 104527.00 Da | ||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||
| Length | 927 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAETKAKRLL KVEIRFSFLV PIRFTNKSDD SEGLKDRVAH DSNLLNELED WKVEVNEDEI LSRRRRSGLG DLELVMFSQL VKIYLNYHEQ REALFSGKAA 101: SVPPVKYEEQ GIVVDEDEVL SRRRSGLDDL ESVSSKLVYA KKLAEQMENG EYVTHKDTSL LKFVSSSSSS SEEEFRFVSS IQNAILRLDL IPKLPAIGRA 201: SNEVECTELE KEMMRRKMKA WEERDMSEKG TVEVLHKEGL EKPLMSFEKP KFDRNELMSS ISKVKGSEKK LELVNSSHVE LDFDDKIHEI KVMARRAREI 301: EAGIELNEKE KRDVNKETGD SDEDISIQSQ KSLPHDGLTH SEGDDDKDER LGTSTDSENT ELSAFAVPML NGAMVDSGFP NHEMAASDKK KVSNVVPLVP 401: TDGVIQASDV TKDQLSMMKN STGRKSRVIR SVKEAKEFLS RRSGEKELTQ ELSQMAQDSD EIFPKQSDEE RGVARKHKLV DKNKILETGT AVKGSSSNKR 501: EELKSAKSSS GGTEHIEKEE PSGKENWIEK TTMNLSLETQ EPGTIADIAE LYRSEYNDEL EWMKDEKLRD IVFCVRDNEL ADGVSVYDPL EKIIPRWKGP 601: SLDKNPEFLN NYHEQREALF SGKAASVSPV KYEEQSSHQE LSESASSENT LTPSSEITSS QPKIVVEGSD GSVRPGKKSG KEYWQHTKKW SRGFLELYNA 701: ETDPEVKAVM RDMGKDLDRW ITEDEIKDAA DIMEKLPERN KKFMEKKLNK LKREMELFVR AGTYARDADC LFLTEKSLLM LSVLFKVYGA MVDSGFPEHE 801: IAASDKEKVS NLVPLVPTHG IIQSSEAEYC GICSNPIFTV YLDSVGNVAK VEVDEDEVLS RRSGLDDLEL VSSRLQKVLE DQISGSDKLV QLQAKFKNAL 901: EEAVLAENGV ENNCRDAEIS CPDSSAP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)