AT4G00060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotidyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:21437..27996 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 163806.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.65 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 1481 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MENRHLPSKF FSSASSMAQN QLIDSLTSHI SLYHSHSSSS SMANTIPNPR SAILRWFSSL SVHQRLSHLT VVDPKFVQIL LQMLGYIRTK GPCSFIILPD 0101: LPSSSDLPSL CFKKSRGLIS RVSESNESER FVFDSTRLFG SGEGERAQDC SCSVNSLDSV VMAEEFLTNV DRFVETMDVL SDGAFLRGEE SDLGSNWVEL 0201: EWLKAKGYYS MEAFVANRLE VSMRLAWLNT NSGKRRGIKL KEKLNAAAAA ANSYWRKKAC VDWWQNLDAA THKKIWTCLF GKSAKSVIYE ILREANQAQQ 0301: GEMWLFNFAS ARKGRTDTSA VSFCDMILEP NSVPRKPITV ASNLSGLYVL QEFASLLILC QNGLVPVHSV FFSSMGTITT LVDCILRKLR GFLMVISIDS 0401: VKSELLDDNT HKCSPSSSSN QKLGSTNRKQ KGKTRNMKKP TPEAKSDKNV NLSTKNGKKD QAKLEFNKSR EAIECKKVPT ASTMINDPEA SAATMEVVPG 0501: LVARKGRTKK KRKEKNKSKK CTSLENNGEV NKSVVNSSAI VKASKCDSSC TSANQHPQEY INAQIIEEHG SFSCERNRSG TCASVNGAAN CEYSGEEESH 0601: SKAETHVISS DLSSVDPAGG PSCENVNPQK SCCRGDRKEK LTMPNERSRT LDEGESHRIH HQRREAGYGF ASSSSEFVSY EWPAVAPMYF SHVSSHLPTA 0701: TDRLHLDVGH NLHPYVRQPF VSTVQHARNP SIEGSHKQVL SRPMPMSLDW PPMVHSNCGL TTAFTCNYDS GILVDIPEQK NKHELGNECE NNWMLEEDFE 0801: VHTVSGVDYN QYFGGGVMYW NPSDHLGTGF SRPPSLSSDD SSWAWHEAEM KRSVDDMVAF SSSYSANGLD SPTAASFCSP FHPLGPPNQP LGYVVPGNEI 0901: STKILQAPPT TIEGAGEEEV SGTLASLSGD VEGNSGDSLP YPILRPIIIP NMSKSEYKRS YDTKSPNVPP TRREHPRIKR PPSPVVLCVP RAPRPPPPSP 1001: VSNSRARRGF PTVRSGSSSP RHWGMRGWFH DGVNWEEPRG AEIVLPWRNK SLAVRPIIQP LPGALLQDHL IAMSQLGRDQ EHPDVAFPLQ PPELLNCPMQ 1101: GESLSLIHGI LNDEIDSFCK QVAAENMARK PYINWAIKRV TRSLQVLWPR SRTNIFGSSA TGLSLPSSDV DLVVCLPPVR NLEPIKEAGI LEGRNGIKET 1201: CLQHAARYLA NQEWVKTDSL KTVENTAIPI IMLVVEVPCD LICSIQSPKD GPDCITVDQD SNGNTEMVGF EDSAAANSLP TNTGNLAIAK SVRLDISFKT 1301: PSHTGLQTTQ LVKDLTEQFP AATPLALVLK QFLADRTLDQ SYSGGLSSYC LVLLITRFLQ HEHHLGRSIN QNLGGLLMDF LYFFGNVFDP RQMRVSVQGS 1401: GIYRNRERGY SIDPIHIDDP LFPTNNVGRN CFRIHQCIKA FSEAYSVLEN ELTCITSTSD SCGKQQLHNL LPKIIPSIIS S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)