AT1G15240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phox-associated domain;Phox-like;Sorting nexin, C-terminal | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1); Has 583 Blast hits to 560 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 268; Fungi - 113; Plants - 135; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5243799..5246495 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80073.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.75 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||
| Length | 706 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTQKQVVTI RDLVDEAKKR IVIVVICVVG LSYLMSLTSS SVLVNLTPAV LLIILFRYYT LDSEMKRKAA AYTNKPSSSL NAPTLNKTPE LPKAAPRSDW 101: RSKVNSQVVE DAIDHFTRHL ISEWVLDLWY SRITPDKQGP EELVFIINDV LGELSRRFRN VNLIDLLTRD LIDIICRRVE LFRECQAKIE RQQRRSLSFE 201: DRDSELRRVM ASEDKLHPAL FSPESEHKVL QHIVNSLILV TFRPEDLHCA FFHYTVRELF ACCVIRPVLN LANPRFINER IEAAVMSRIK TTIRSSAAEE 301: ASQSEDLSNV SPDHFSRYMD PSVTGVELVQ LKNEQQKNSK KKSATDKQHV KELSKDPLLS MDTRSSRSWN SFPSTSKIGD GSKDPQGHRG GEGWGDVLDM 401: MSQRKTETLA PEHLESVWAK GRNYKKKEGG KVDERVPPRW SSKAGDCNEN TVNARESSQR KVVNTDSHLS SYSSAEEDEE QTKSSHSYTS EDEETVTGLN 501: SPGTRVWDGR TKKNLGVSRI HHPLENSGRS LKKTSKGHER YQQVPGHQSG RKRSRISGHI IDDDDSDDSE DGSLTRSYSG MSATSSTSYV SAAESDLPNA 601: PKSSLLVDSF AKLRCEVLGA NIVKGSSKMF AVYSVAVTDE SNHSWSIKRR FRHFEELHRR LKVFPEYKLH LPPKHFLSTG VDIPVIQERC VLLDEYIKVK 701: RHVSCF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)