AT4G39720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VQ motif-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G35830.1); Has 406 Blast hits to 390 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 7; Plants - 145; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18429992..18430864 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31484.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||
| Length | 290 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESGNSSSMQ SSSGGGGGGE EEYDSRAADQ SISAFFDHHN NHVSSIPTPQ QNHRNLLHFD HNNNNSLIPP NYFNNNTFLP VNQQPDPISQ LDLRTSSATS 101: SLPPTNNIGV IKKTKKRSRA SRRAPTTVLT TDTSNFRAMV QEFTGIPAPP LFNNNSIVNT TRLNTFLGLS SSSPNTYNTN NLLLRPFAQK LTPATPLLSG 201: SQIQQYQNPN NGFEDMNLQA LLQAHISNPR SNEHDQFGLG MMQTPSTNPP TTTAAANGNI NTGDNGSYGG SDHEHNNDGT WLSSSSDQRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)