AT4G38080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G22510.1); Has 4732 Blast hits to 2740 proteins in 428 species: Archae - 22; Bacteria - 604; Metazoa - 1100; Fungi - 265; Plants - 1375; Viruses - 486; Other Eukaryotes - 880 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17883012..17883398 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 13895.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.92 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||
| Length | 128 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPLKNSFVT SLVIALTFTS FFTSLSAHRH LLQSTPVTQP PALTFPPLPK TTMPPVPSLP TPGQQTLPQP QPTLPQPTGL PPMPSTQIPS LPNQVQPTIP 101: NIPQINFPSN FPFNFPFNIP FLTPPPSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)