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AT5G47635.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
no data
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT2G40113.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J116eggNOG:ENOG410Z0P8EMBL:BT024825EMBL:CP002688
EnsemblPlants:AT5G47635EnsemblPlants:AT5G47635.1entrez:834814GeneID:834814
Gramene:AT5G47635.1hmmpanther:PTHR33210HOGENOM:HOG000006460KEGG:ath:AT5G47635
OMA:CACWPRRPfam:PF01190PhylomeDB:Q29PT1Proteomes:UP000006548
RefSeq:NP_568686.1TAIR:AT5G47635TMHMM:TMhelixUniGene:At.49139
UniGene:At.71104UniProt:Q29PT1
Coordinates (TAIR10) chr5:-:19307281..19307849
Molecular Weight (calculated) 18422.40 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.05
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSFFIIRCF LLLSFFLFTG AFGNNLWTRT EMVEMAGYGE QKLSSVVITG SLLCDTSRPH LHSIPIPGAT VAIKCHTGSK RRSKWIKAVT DELGEFEIDL
101: PSQLHAIPHL ENTCFIKPVY VPRPYRCYNT STNIHKPIKL VSSTNGFRVY TSGKIRLQGH SSRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)