suba logo
AT3G28550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Proline-rich extensin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 433536 Blast hits to 44790 proteins in 1795 species: Archae - 956; Bacteria - 66952; Metazoa - 162710; Fungi - 67978; Plants - 67619; Viruses - 11578; Other Eukaryotes - 55743 (source: NCBI BLink).
Protein Annotations
EMBL:AP000420EMBL:CP002686EnsemblPlants:AT3G28550EnsemblPlants:AT3G28550.1
entrez:822485GeneID:822485GO:GO:0005199GO:GO:0009664
GO:GO:0016021Gramene:AT3G28550.1InterPro:IPR006706KEGG:ath:AT3G28550
OMA:KIVYKSPPfam:PF04554Proteomes:UP000006548RefSeq:NP_189496.1
STRING:3702.AT3G28550.1TAIR:AT3G28550TMHMM:TMhelixUniGene:At.10557
UniProt:Q9LJK0
Coordinates (TAIR10) chr3:-:10700873..10703929
Molecular Weight (calculated) 113140.00 Da
IEP (calculated) 9.63
GRAVY (calculated) -0.96
Length 1018 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGPSAHLVYA IGVIIMATMV AAYEPYTDSS PPPYSVPLPK VEYKSPPLPD VYSSPPPPLE YSPAPKVDYK SPPPPYYSPS PKVEYKSPPP PYVYNSPPPP
0101: YYSPSPKVDY KSPPPPYVYS SPPPPIYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVEY KSPPSPYVYN SPPPSYYSPS PKVDYKSPPP PYVYSSPPPP
0201: YYSPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKIVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP
0301: YYSPSPKVVY KSPPPPYVYS SPPPPYYSPT PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKIVYKSPPP PYVYSSPPPP
0401: YYTPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP
0501: YYSPSPKVLY KSPPPPYVYS SPPPPYYSPS PKVVYKSPPP PYVYSSPPPP YYSPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVVYKSPPP PYVYSSPPPP
0601: YYSPSPKVYY KSPPSPYHAP SPKVLYKSPP HPHVCVCPPP PPCYSPSPKV VYKSSPPPYV YSSPPPPYHS PSPKVHYKSP PPPYVYSSPP PPYYSPSPKV
0701: HYKSPPPPYV YSSPPPPYYS PSPKVVYKSP PPPYVYSSPP PPYYSPSPKV VYKSPPPPYV YSSPPPPYYS PSPKVVYKSP PPPYVYSSPP PPYYSPSPKV
0801: VYKSPPPPYV YSSPPPPYYS PSPKVVYKSP PPPYVYSSPP PPYYSPSPKV VYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPSPKV
0901: DYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPAPKV DYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYYSPSPK VDYKSPPPPY
1001: VYSSPPPPSY SPSPKTEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)