AT5G06640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: shoot apex, hypocotyl, sepal, root, leaf; EXPRESSED DURING: 4 anthesis, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G08410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2039859..2041928 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 77510.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.67 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||
| Length | 689 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFKYNIKPKQ INKNKEMGMM RSSRTMGLGH CMVYVVVLSA IAATVTSYPY SSPYSSPQTP HYNSPSHEHK SPKYAPHPKP YVYISPPPPS YYSPSPKVNY 101: KSPPPPNVYN SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVEYKSPPP PYVYNSPPPP YYSPSPKIEY 201: KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYNSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYFSPS PKVEYKSPPP PYVYNSPPPP YYSPSPKVEY 301: KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPQ YYSPSPKVAY 401: KSPPPPYVYS SPPPPYYSPS PKVAYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVEYKSPPP PYVYSSPPPP YYSPSPKVEY 501: KSPPPPYVYS SPPPPYHSPS PKVNYKSPPP PYVYSSHPPP YYSPSPKVNY KSPPPPYVYS SPPPPYYSPS PKVNYKSPPP PYVYSSPPPP YYSPSPMVDY 601: KSTPPPYVYS FPPLPYYSPS PKVDYKSPPL PYVYSSPPPL YYSPSPKVHY KSPPPPYVYN SPPPPYYSPS PKVTYKSPPP PYVYKAPYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)