AT2G24980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT5G35190.1); Has 220761 Blast hits to 34768 proteins in 1520 species: Archae - 438; Bacteria - 30458; Metazoa - 82691; Fungi - 36561; Plants - 34369; Viruses - 5711; Other Eukaryotes - 30533 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10622453..10624132 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 63166.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIENCIVYV VVLSAIAATV TSYPYSSPQT PSYNSPSYEH KGPKYAPHPK PYVKSSPPPQ YYTPSPKVNY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP 101: PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYNSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP 201: PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP 301: PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP 401: PYVYNSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPSYVYS SPPPPYYSPS PKVYYKSPPP 501: SYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVTYKSPPP PYVYKTPYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)