AT2G23890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380), Purine 5'-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT1G75210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10170680..10173622 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64314.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||
| Length | 553 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSSRRLLLP LGASLTRGRF SSDQIRNGFL RNFRGFATVT SSEPALANLE AKYAVALPEC STVEDEITKI RHEFELAKQR FLNIPEAINS MPKMNPQGIY 101: VNKNLRLDNI QVYGFDYDYT LAHYSSHLQS LIYDLAKKHM VNEFRYPDVC TQFEYDPTFP IRGLYYDKLK GCLMKLDFFG SIEPDGCYFG RRKLSRKEIE 201: SMYGTRHIGR DQARGLVGLM DFFCFSEACL IADMVQYFVD AKLEFDASNI YNDVNRAIQH VHRSGLVHRG ILADPNRYLL KNGQLLRFLR MLKDKGKKLF 301: LLTNSPYNFV DGGMRFLMEE SFGFGDSWRE LFDVVIAKAN KPEFYTSEHP FRCYDSERDN LAFTKVDAFD PKKVYYHGCL KSFLEITKWH GPEVIYFGDH 401: LFSDLRGPSK AGWRTAAIIH ELEREIQIQN DDSYRFEQAK FHIIQELLGR FHATVSNNQR SEACQSLLDE LNNARQRARD TMKQMFNRSF GATFVTDTGQ 501: ESAFSYHIHQ YADVYTSKPE NFLLYRPEAW LHVPYDIKIM PHHVKVASTL FKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)