AT5G59980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polymerase/histidinol phosphatase-like | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 397 Blast hits to 397 proteins in 185 species: Archae - 13; Bacteria - 5; Metazoa - 139; Fungi - 139; Plants - 45; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24147207..24149392 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64082.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||
| Length | 581 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFFDLSIPY NEPPRSGGKE IAGGKTLRLK LATKAMELGY VGIAHNRSIK GVMSDKDSCT IPLLTLGSLI KVAPRLASSV GFHRDLLGVP RTTPFRQYTR 101: LTVHVESNAQ CQSLNSGNPI LKSYDIIAVR PMNQNAFDYA CEKAEVDLIS IDFTDKMLFR LKHPMVKAAI QRGIYFEIKY SDILMDAQTR RQVISNAKLL 201: VDWTRGKNLI ISSGAPSVTE LRGPNDVINL MFLLGLSAER ARAAISKNCR NMIAKVLKKK RFHKEAVRVE LLSAGDTFSL EQPLSEDCMK WDRLSSGEGD 301: MLLDDLAKAF DATNVVAHKS SKAIDFTSVL DGLPKHGFRV KDIVGTESVT QPSAAKVIDT QVHSSNQVSE LRMATASSDD NLREIETISQ IDMLMSEDDN 401: KVEPTTNVLK EEAFALRKCS ASHGQGILVQ NQTATPFTLT RCTKSEAASD VSMNIESTSE GGSMSPSKSD HGIPQSPVEV NNMGNAAFEE EASVDENSKE 501: RATTGHASND EMHITESGHH ASIDDEKHIP EPEHLTSIAD EMKIDCSSEA NHDEYMEVTM EDQMHETVQM RLCKTMTKHQ D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)