AT3G17910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Surfeit locus 1 cytochrome c oxidase biogenesis protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SURFEIT 1 (SURF1); CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: Surfeit locus 1 cytochrome c oxidase biogenesis protein (TAIR:AT1G48510.1); Has 1714 Blast hits to 1712 proteins in 488 species: Archae - 0; Bacteria - 777; Metazoa - 126; Fungi - 127; Plants - 43; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6133581..6136053 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39923.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.36 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 354 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSLSKILT RSNTKRYWCS TTTSISASPS LPKQFWSRHF SAVADSSSSS SAALGSQSSS SAPPQENKRG SKWSQLLLFL PGAITFGLGS WQIVRREEKF 101: KTLEYQQQRL NMEPIKLNID HPLDKNLNAL EFRRVSCKGV FDEQRSIYLG PRSRSISGIT ENGFFVITPL MPIPGDLDSM QSPILVNRGW VPRSWREKSQ 201: ESAEAEFIAN QSTKAKSPSN EPKSWWKFWS KTPVITKEHI SAVKPVEVVG VIRGGENPSI FVPSNDPSTG QWFYVDVPAM ARAVGLPENT IYVEDVHEHV 301: DRSRPYPVPK DINTLIRSKV MPQDHLNYSI TWYSLSAAVT FMAYKRLKAK PVRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)