AT3G06920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: proton gradient regulation 3 (TAIR:AT4G31850.1); Has 81615 Blast hits to 15733 proteins in 342 species: Archae - 9; Bacteria - 150; Metazoa - 1130; Fungi - 1463; Plants - 75788; Viruses - 0; Other Eukaryotes - 3075 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2181717..2184449 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98344.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 871 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGFARTKFC KNLSSLSDNG ENHEKPYTFE GNRQTVNDIC NVLETGPWGP SAENTLSALS FKPQPEFVIG VLRRLKDVNR AIEYFRWYER RTELPHCPES 101: YNSLLLVMAR CRNFDALDQI LGEMSVAGFG PSVNTCIEMV LGCVKANKLR EGYDVVQMMR KFKFRPAFSA YTTLIGAFSA VNHSDMMLTL FQQMQELGYE 201: PTVHLFTTLI RGFAKEGRVD SALSLLDEMK SSSLDADIVL YNVCIDSFGK VGKVDMAWKF FHEIEANGLK PDEVTYTSMI GVLCKANRLD EAVEMFEHLE 301: KNRRVPCTYA YNTMIMGYGS AGKFDEAYSL LERQRAKGSI PSVIAYNCIL TCLRKMGKVD EALKVFEEMK KDAAPNLSTY NILIDMLCRA GKLDTAFELR 401: DSMQKAGLFP NVRTVNIMVD RLCKSQKLDE ACAMFEEMDY KVCTPDEITF CSLIDGLGKV GRVDDAYKVY EKMLDSDCRT NSIVYTSLIK NFFNHGRKED 501: GHKIYKDMIN QNCSPDLQLL NTYMDCMFKA GEPEKGRAMF EEIKARRFVP DARSYSILIH GLIKAGFANE TYELFYSMKE QGCVLDTRAY NIVIDGFCKC 601: GKVNKAYQLL EEMKTKGFEP TVVTYGSVID GLAKIDRLDE AYMLFEEAKS KRIELNVVIY SSLIDGFGKV GRIDEAYLIL EELMQKGLTP NLYTWNSLLD 701: ALVKAEEINE ALVCFQSMKE LKCTPNQVTY GILINGLCKV RKFNKAFVFW QEMQKQGMKP STISYTTMIS GLAKAGNIAE AGALFDRFKA NGGVPDSACY 801: NAMIEGLSNG NRAMDAFSLF EETRRRGLPI HNKTCVVLLD TLHKNDCLEQ AAIVGAVLRE TGKARHAARS W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)