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AT1G06980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZSXeggNOG:ENOG410YSF4EMBL:AC067971EMBL:AK117118
EMBL:AY088543EMBL:BT024871EMBL:CP002684EnsemblPlants:AT1G06980
EnsemblPlants:AT1G06980.1entrez:837208GeneID:837208Gramene:AT1G06980.1
hmmpanther:PTHR33052hmmpanther:PTHR33052:SF26HOGENOM:HOG000237531InterPro:IPR025322
KEGG:ath:AT1G06980OMA:ECVKLCEPfam:PF14009PhylomeDB:Q9LMJ2
PIR:E86204Proteomes:UP000006548RefSeq:NP_563773.1TAIR:AT1G06980
UniGene:At.42319UniProt:Q9LMJ2
Coordinates (TAIR10) chr1:-:2143248..2143757
Molecular Weight (calculated) 18943.90 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.52
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNSLRCCLA CVLPCGALDL IRIVHLNGYV EEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSLPEKK RRRKDTPRRK
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)