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AT5G60900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor-like protein kinase 1
Curator
Summary (TAIR10)
Encodes a receptor-like protein kinase.
Computational
Description (TAIR10)
receptor-like protein kinase 1 (RLK1); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G34300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G60900EnsemblPlants:AT5G60900.1entrez:836211hmmpanther:PTHR27002hmmpanther:PTHR27002:SF34Pfam:PF00069Pfam:PF01453
Pfscan:PS50011Pfscan:PS50927scanprosite:PS00107scanprosite:PS00108tair10-symbols:RLK1
Coordinates (TAIR10) chr5:-:24498467..24501494
Molecular Weight (calculated) 84527.40 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.41
Length 748 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLSCSIIH LVLILQLQTF FVFSQNIRNG SVPVGESLTA SESQQISSSW RSPSGDFAFG FRKIQPNDGF TLSIWFDKIS DKTIVWHAQA VNTTTGLVPN
101: GSKVTLTADG GLVIADPRGQ ELWRALSGGS VSRGRFTDDG NFVLFRDGSE DSDEVLWSSF ENPTDTLLPN QNIEVGRNLS SRRTETSFKK GRFSLRLEDD
201: GNLQLHSLNA ETASESDIYS QYYESNTNDP NNPGIQLVFN QSGEIYVLQR NNSRFVVKDR DPDFSIAAPF YISTGPDDAL GNMACGYNNI CSLGNNKRPK
301: CECPERFVLK DPSNEYGDCL PDFEMQTCRP ENQTANSDVN LYEFITLEKT NWPFGDYESY ANYDEERCKA SCLSDCLCAA VIFGTNRDLK CWKKKFPLSH
401: GERSPRGDSD TFIKVRNRSI ADVPVTGNRA KKLDWVFTYG ELAEATRDFT EELGRGAFGI VYKGYLEVAG GSEVTVAVKK LDRLDLDNEK EFKNEVKVIG
501: QIHHKNLVRL IGFCNEGQSQ MIVYEFLPQG TLANFLFRRP RPSWEDRKNI AVAIARGILY LHEECSEQII HCDIKPQNIL LDEYYTPRIS DFGLAKLLLM
601: NQTYTLTNIR GTKGYVAPEW FRNSPITSKV DVYSYGVMLL EIVCCKKAVD LEDNVILINW AYDCFRQGRL EDLTEDDSEA MNDMETVERY VKIAIWCIQE
701: EHGMRPNMRN VTQMLEGVIQ VFDPPNPSPY STFTWSDESL SSDPVSLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)