AT3G61280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis thaliana protein of unknown function (DUF821) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61290.1); Has 683 Blast hits to 672 proteins in 134 species: Archae - 0; Bacteria - 47; Metazoa - 230; Fungi - 121; Plants - 246; Viruses - 5; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22681145..22683589 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63161.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||
| Length | 536 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRENTQVAQF TEDHHQRHQT PITCLSSKLA KIWTLFTTKI FIFVLFIILL SASVSWMYAF VLGENKFQVT SIFTRNTKKS TPTKTTTTTD IPKIAIKIPL 101: NCTSLNSNTT QTCPSNYPTK FEPAISSSET CPDYFKWIHR DLKVWQKTGI TRETLERARP NAHFRIVIKS GRLYVHQYEK AFQTRDVFTI WGILQLLRMY 201: PGQIPDLELL FLCHDRPAIW KRDLKKKRKD TWPPPPLFHY CGHRDAYDIV FPDWSFWGWP ELNIKEWNKL SVALKEGNKK VKWEDRVPYA YWKGNPHVSP 301: IRGDLMRCNF SDKYDPMVRL YVQDWRSEIE AGFRGSNLED QCTHRYKIYI EGNAWSVSEK YILSCDSMTL LVKPEYYDFF FRSMVPMKHF WPIRQNNKCG 401: DLKFAVEWGN NNTEKAQIIG RQGSEYMMKN LKMKYVYDYM LYVLQGYGKL MKLDVTVPEN ATEVCSETMA CSITDGGRIR QCMDDSLVMS PSVKAACDLP 501: PSYGDYELKK FRKKQESAER KVEQWTNKYW NLRDPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)