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AT5G47840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : adenosine monophosphate kinase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
adenosine monophosphate kinase (AMK2); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase family protein (TAIR:AT5G35170.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47840-MONOMERBRENDA:2.7.4.3EC:2.7.4.3eggNOG:COG0563eggNOG:KOG3078EMBL:AB016886EMBL:AY049305
EMBL:BT001036EMBL:CP002688EnsemblPlants:AT5G47840EnsemblPlants:AT5G47840.1entrez:834835Gene3D:3.40.50.300GeneID:834835
Genevisible:Q9FIJ7GO:GO:0004017GO:GO:0005524GO:GO:0009507GO:GO:0009570GO:GO:0046939GO:GO:2000505
Gramene:AT5G47840.1gramene_pathway:2.7.4.3gramene_pathway:DENOVOPURINE3-PWYHAMAP:MF_00235hmmpanther:PTHR23359hmmpanther:PTHR23359:SF72HOGENOM:HOG000238772
InParanoid:Q9FIJ7InterPro:IPR000850InterPro:IPR006259InterPro:IPR027417iPTMnet:Q9FIJ7KEGG:00230+2.7.4.3KEGG:ath:AT5G47840
KO:K00939OMA:MYDDITIPANTHER:PTHR23359PaxDb:Q9FIJ7Pfam:PF00406Pfam:Q9FIJ7PhylomeDB:Q9FIJ7
PRIDE:Q9FIJ7PRINTS:PR00094PRO:PR:Q9FIJ7PROSITE:PS00113ProteinModelPortal:Q9FIJ7Proteomes:UP000006548RefSeq:NP_199595.1
scanprosite:PS00113SMR:Q9FIJ7STRING:3702.AT5G47840.1SUPFAM:SSF52540TAIR:AT5G47840tair10-symbols:AMK2TIGRfam:TIGR01351
TIGRFAMs:TIGR01351UniGene:At.22595unipathway:UPA00588UniProt:Q9FIJ7
Coordinates (TAIR10) chr5:+:19375488..19378058
Molecular Weight (calculated) 31453.60 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.40
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGCVNSISP PPVTLYRHRA SPSRSSFSLS GDALHSLYRH RRVSRSPSII APKFQIVAAE KSEPLKIMIS GAPASGKGTQ CELITHKYGL VHISAGDLLR
101: AEIASGSENG RRAKEHMEKG QLVPDEIVVM MVKDRLSQTD SEQKGWLLDG YPRSASQATA LKGFGFQPDL FIVLEVPEEI LIERVVGRRL DPVTGKIYHL
201: KYSPPETEEI AVRLTQRFDD TEEKAKLRLK THNQNVSDVL SMYDDITIKI EGNRSKEEVF AQIDSSLSEL LQERNTAPSS LLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)