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AT2G43945.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INDGeggNOG:ENOG410XSX5EMBL:CP002685EnsemblPlants:AT2G43945
EnsemblPlants:AT2G43945.1entrez:818999GeneID:818999GO:GO:0009507
GO:GO:0009570Gramene:AT2G43945.1hmmpanther:PTHR32183hmmpanther:PTHR32183:SF3
InParanoid:F4IT21KEGG:ath:AT2G43945OMA:ATPEYKSPaxDb:F4IT21
PRIDE:F4IT21ProteinModelPortal:F4IT21Proteomes:UP000006548RefSeq:NP_850404.1
STRING:3702.AT2G43945.1SUPFAM:SSF102405TAIR:AT2G43945UniGene:At.46732
UniProt:F4IT21
Coordinates (TAIR10) chr2:-:18197995..18199988
Molecular Weight (calculated) 32168.70 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.23
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSLPLRLL LPLTTSLISP PPPPPDSFHA PSSFRSKNPN FKRRLSSSSC CSSQSQLFSG RCRSYSRCVT MCLPEHMRNQ ENTEILTDKD DHIECVLESD
101: EDSGLRIPTQ AQAIVEGSGS VAVSELKPAA DVDYIQELLA IQQQGPRSIG FFGTRNMGFM HQELIEILSY AMVITKNHIY TSGASGTNAA VIRGALRAER
201: PELLTVILPQ SLKKQPPESQ ELLSKVQNVV EKPHNDHLPL LEASRLCNMD IISQVQQVIC FAFHDSKLLM ETCQEAKNLR KIVTLFYLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)