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AT5G25500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.782
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II2HeggNOG:ENOG410YAIFEMBL:AY735688EMBL:AY924841EMBL:CP002688EnsemblPlants:AT5G25500EnsemblPlants:AT5G25500.1
entrez:832625GeneID:832625Gramene:AT5G25500.1hmmpanther:PTHR37763hmmpanther:PTHR37763:SF1HOGENOM:HOG000243709KEGG:ath:AT5G25500
OMA:FLNVSAQPhylomeDB:Q5XV34Proteomes:UP000006548RefSeq:NP_197932.1STRING:3702.AT5G25500.1TAIR:AT5G25500UniGene:At.21464
UniGene:At.66675UniProt:Q5XV34
Coordinates (TAIR10) chr5:+:8881118..8882380
Molecular Weight (calculated) 48925.20 Da
IEP (calculated) 7.57
GRAVY (calculated) -0.26
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MWVNGYHQIR IHLNSELSFK ANPSRFFRSF QVLYHPSVDS YEDVLPHEWY ETKLPVLKKL NRALRDVDLV DGKLEDINGV IVYDDGITKK MQAFKSLARI
101: FIGSPSIQQK LREEGRFKFP FFGSESEREP LVVNSLTKVC NFLNVSAQQR KLVRSTVCSQ VTQYRIWRGT LEDILNGLKE EVDWLVEHRE MSQGRVLAQQ
201: VILSCLRFLS ESSVSFEVEK STSWMRPVPA RYAKANASAK WEDVLDMVND LRRYLEHDEE ITVLYHLDKL VSMKEGLLQI KDVFLDNTIG FREVRHQEHL
301: VYRKLSKLLG SPSPCLFALV MYFLYGRVRD IEVDLCGGFY KEKSEFLCLS MGRILTSTDE KMLERGMKQL DRALGLFEFV WETAGMKETL NLQGHLWCLG
401: AEERSITYRG KTFFVHDLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)