AT3G13880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47940 Blast hits to 13892 proteins in 261 species: Archae - 0; Bacteria - 5; Metazoa - 141; Fungi - 107; Plants - 47020; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4572180..4574426 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83198.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 748 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLQFRAKTF FNNIAQDSLV TLITKRVGLG YRFLSSLCQP KNTALDSEGY KILFQTAAKS GSVVLGKLAH GHMIKSSLNP CLYLLNNLLN MYCKCRELGF 101: ARQLFDRMPE RNIISFNSLI SGYTQMGFYE QAMELFLEAR EANLKLDKFT YAGALGFCGE RCDLDLGELL HGLVVVNGLS QQVFLINVLI DMYSKCGKLD 201: QAMSLFDRCD ERDQVSWNSL ISGYVRVGAA EEPLNLLAKM HRDGLNLTTY ALGSVLKACC INLNEGFIEK GMAIHCYTAK LGMEFDIVVR TALLDMYAKN 301: GSLKEAIKLF SLMPSKNVVT YNAMISGFLQ MDEITDEASS EAFKLFMDMQ RRGLEPSPST FSVVLKACSA AKTLEYGRQI HALICKNNFQ SDEFIGSALI 401: ELYALMGSTE DGMQCFASTS KQDIASWTSM IDCHVQNEQL ESAFDLFRQL FSSHIRPEEY TVSLMMSACA DFAALSSGEQ IQGYAIKSGI DAFTSVKTSS 501: ISMYAKSGNM PLANQVFIEV QNPDVATYSA MISSLAQHGS ANEALNIFES MKTHGIKPNQ QAFLGVLIAC CHGGLVTQGL KYFQCMKNDY RINPNEKHFT 601: CLVDLLGRTG RLSDAENLIL SSGFQDHPVT WRALLSSCRV YKDSVIGKRV AERLMELEPE ASGSYVLLHN IYNDSGVNSS AEEVRELMRD RGVKKEPALS 701: WIVIGNQTHS FAVADLSHPS SQMIYTMLET MDNVDFVDYT LVHFCSVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)