AT2G01510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 35573 Blast hits to 13630 proteins in 255 species: Archae - 0; Bacteria - 7; Metazoa - 76; Fungi - 94; Plants - 34882; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:230752..232506 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66075.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.08 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 584 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLAKQTPLTK QMLSELLRAS SSKPKQLKKI HAIVLRTGFS EKNSLLTQLL ENLVVIGDMC YARQVFDEMH KPRIFLWNTL FKGYVRNQLP FESLLLYKKM 101: RDLGVRPDEF TYPFVVKAIS QLGDFSCGFA LHAHVVKYGF GCLGIVATEL VMMYMKFGEL SSAEFLFESM QVKDLVAWNA FLAVCVQTGN SAIALEYFNK 201: MCADAVQFDS FTVVSMLSAC GQLGSLEIGE EIYDRARKEE IDCNIIVENA RLDMHLKCGN TEAARVLFEE MKQRNVVSWS TMIVGYAMNG DSREALTLFT 301: TMQNEGLRPN YVTFLGVLSA CSHAGLVNEG KRYFSLMVQS NDKNLEPRKE HYACMVDLLG RSGLLEEAYE FIKKMPVEPD TGIWGALLGA CAVHRDMILG 401: QKVADVLVET APDIGSYHVL LSNIYAAAGK WDCVDKVRSK MRKLGTKKVA AYSSVEFEGK IHFFNRGDKS HPQSKAIYEK LDEILKKIRK MGYVPDTCSV 501: FHDVEMEEKE CSLSHHSEKL AIAFGLIKGR PGHPIRVMKN LRTCDDCHAF SKFVSSLTST EIIMRDKNRF HHFRNGVCSC KEFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)