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AT5G14770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 76339 Blast hits to 14879 proteins in 308 species: Archae - 3; Bacteria - 87; Metazoa - 1237; Fungi - 1442; Plants - 70832; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL391149EMBL:CP002688EnsemblPlants:AT5G14770EnsemblPlants:AT5G14770.1entrez:831329
Gene3D:1.25.40.10GeneID:831329Genevisible:Q9LER0GO:GO:0005739Gramene:AT5G14770.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF824
HOGENOM:HOG000083122InParanoid:Q9LER0InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9LER0KEGG:ath:AT5G14770PaxDb:Q9LER0
Pfam:PF12854Pfam:PF13041Pfam:Q9LER0Pfscan:PS51375PhylomeDB:Q9LER0PIR:T51422PRIDE:Q9LER0
PRO:PR:Q9LER0PROSITE:PS51375ProteinModelPortal:Q9LER0Proteomes:UP000006548RefSeq:NP_196981.1SMR:Q9LER0STRING:3702.AT5G14770.1
SUPFAM:SSF81901TAIR:AT5G14770TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65512UniProt:Q9LER0
Coordinates (TAIR10) chr5:-:4772881..4775697
Molecular Weight (calculated) 105322.00 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.01
Length 938 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRIWNNYKG KYRFFLSNCR SFSSIKRPQI PESEETSLSI TQRRFDPDLA PIKTRVYVSL FHTLFRLYLS CERLYGAART LSAMCTFGVV PDSRLWNSLI
101: HQFNVNGLVH DQVSLIYSKM IACGVSPDVF ALNVLIHSFC KVGRLSFAIS LLRNRVISID TVTYNTVISG LCEHGLADEA YQFLSEMVKM GILPDTVSYN
201: TLIDGFCKVG NFVRAKALVD EISELNLITH TILLSSYYNL HAIEEAYRDM VMSGFDPDVV TFSSIINRLC KGGKVLEGGL LLREMEEMSV YPNHVTYTTL
301: VDSLFKANIY RHALALYSQM VVRGIPVDLV VYTVLMDGLF KAGDLREAEK TFKMLLEDNQ VPNVVTYTAL VDGLCKAGDL SSAEFIITQM LEKSVIPNVV
401: TYSSMINGYV KKGMLEEAVS LLRKMEDQNV VPNGFTYGTV IDGLFKAGKE EMAIELSKEM RLIGVEENNY ILDALVNHLK RIGRIKEVKG LVKDMVSKGV
501: TLDQINYTSL IDVFFKGGDE EAALAWAEEM QERGMPWDVV SYNVLISGML KFGKVGADWA YKGMREKGIE PDIATFNIMM NSQRKQGDSE GILKLWDKMK
601: SCGIKPSLMS CNIVVGMLCE NGKMEEAIHI LNQMMLMEIH PNLTTYRIFL DTSSKHKRAD AIFKTHETLL SYGIKLSRQV YNTLIATLCK LGMTKKAAMV
701: MGDMEARGFI PDTVTFNSLM HGYFVGSHVR KALSTYSVMM EAGISPNVAT YNTIIRGLSD AGLIKEVDKW LSEMKSRGMR PDDFTYNALI SGQAKIGNMK
801: GSMTIYCEMI ADGLVPKTST YNVLISEFAN VGKMLQAREL LKEMGKRGVS PNTSTYCTMI SGLCKLCTHP DVEWNKKAMY LAEAKGLLKE MVEEKGYIPC
901: NQTIYWISAA FSKPGMKVDA ERFLKECYKK KNARSSNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)