AT2G26790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G13800.1); Has 52197 Blast hits to 13814 proteins in 285 species: Archae - 9; Bacteria - 44; Metazoa - 475; Fungi - 643; Plants - 49485; Viruses - 2; Other Eukaryotes - 1539 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11425270..11427669 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90365.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||||||||||||||||||
| Length | 799 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFSPTFFLL SQLRLTRRRA ATSSRFYAVS ALNNPNNLSD SEQQQVNHLN LSKLTQHGLQ RLLNSTRDDP NLALSFLRQL KEHGVSPNVN AYATLVRILT 101: TWGLDIKLDS VLVELIKNEE RGFTVMDLIE VIGEQAEEKK RSFVLIRVSG ALVKAYVSLG MFDEATDVLF QSKRLDCVVD IKACNFLMNR MTEFGKIGML 201: MTLFKQLKQL GLCANEYTYA IVVKALCRKG NLEEAAMLLI ENESVFGYKT FINGLCVTGE TEKAVALILE LIDRKYLAGD DLRAVLGMVV RGFCNEMKMK 301: AAESVIIEME EIGFGLDVYA CLAVIDRYCK NMNLPEALGF LDKMLGKGLK VNCVIVSLIL QCYCKMDMCL EALEKFKEFR DMNIFLDRVC YNVAFDALSK 401: LGRVEEAFEL LQEMKDRGIV PDVINYTTLI DGYCLQGKVV DALDLIDEMI GNGMSPDLIT YNVLVSGLAR NGHEEEVLEI YERMKAEGPK PNAVTNSVII 501: EGLCFARKVK EAEDFFSSLE QKCPENKASF VKGYCEAGLS KKAYKAFVRL EYPLRKSVYI KLFFSLCIEG YLEKAHDVLK KMSAYRVEPG RSMCGKMIGA 601: FCKLNNVREA QVLFDTMVER GLIPDLFTYT IMIHTYCRLN ELQKAESLFE DMKQRGIKPD VVTYTVLLDR YLKLDPEHHE TCSVQGEVGK RKASEVLREF 701: SAAGIGLDVV CYTVLIDRQC KMNNLEQAAE LFDRMIDSGL EPDMVAYTTL ISSYFRKGYI DMAVTLVTEL SKKYNIPSES FEAAVKSAAL KAKRFQYGE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)