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AT4G20130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid transcriptionally active 14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastid transcriptionally active 14 (PTAC14); LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G24610.1); Has 493 Blast hits to 493 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 96; Plants - 292; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
EC:2.1.1.-eggNOG:ENOG410IQFZeggNOG:ENOG410ZB51EMBL:AK221394EMBL:AK230198EMBL:AK230206EMBL:AL021637
EMBL:AL161552EMBL:BT004184EMBL:BT005475EMBL:CP002687EnsemblPlants:AT4G20130EnsemblPlants:AT4G20130.1entrez:827759
Gene3D:3.90.1420.10GeneID:827759Genevisible:Q84JF5GO:GO:0000427GO:GO:0006355GO:GO:0009295GO:GO:0009416
GO:GO:0009507GO:GO:0009508GO:GO:0009534GO:GO:0009658GO:GO:0010027GO:GO:0016279GO:GO:0018026
GO:GO:0042793Gramene:AT4G20130.1hmmpanther:PTHR13271hmmpanther:PTHR13271:SF23HOGENOM:HOG000005778InParanoid:Q84JF5IntAct:Q84JF5
InterPro:IPR001214InterPro:IPR015353KEGG:ath:AT4G20130MINT:MINT-8360691OMA:RAIDFWQPaxDb:Q84JF5Pfam:PF00856
Pfam:PF09273Pfscan:PS50280PhylomeDB:Q84JF5PIR:T04896PIR:T04897PRIDE:Q84JF5PRO:PR:Q84JF5
PROSITE:PS50280ProteinModelPortal:Q84JF5Proteomes:UP000006548RefSeq:NP_193746.3SMR:Q84JF5STRING:3702.AT4G20130.1SUPFAM:0040997
SUPFAM:SSF81822SUPFAM:SSF82199TAIR:AT4G20130tair10-symbols:PTAC14UniGene:At.32744UniProt:Q84JF5
Coordinates (TAIR10) chr4:+:10878914..10881697
Molecular Weight (calculated) 55613.70 Da
IEP (calculated) 5.28
GRAVY (calculated) -0.34
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSVSLQFL TNTFISKPQG FCNGIVSAPR PRSNLLRDRQ NGVRPIKVAS IETQPFPLFQ SPASEESSSS ELETADPDFY KIGYVRSVRA YGVEFKEGPD
101: GFGVYASKDI EPRRRARVIM EIPLELMITI RQKHPWMFFP DIVPIGHPIF DIINSTDPEI DWDIRLACLL LFSFDRDDHF WRLYGDFLPA ADECSSLLLA
201: TEEDLAELQD PDLVSTIRQQ QKRILDFWEK NWHSGVPLKI KRLAEDPERF IWAVSMAQTR CISMQTRVGA LVQELNMMIP YADMLNHSFE PNCFLHWRPK
301: DRMLEVMSNA GQDIKKGEEM TINYMPGQKN NMLMERYGFS TPVNPWDAIK FSGDSRIHLN SFLSVFNIYG LPEEYYHDSE LSRGDTFVDG AVIAAARTLP
401: TWSDIDLPPI PSAERKAVKE LQDECRKMLA EYPTTAEQDQ KLLDSMSEAR TTFATAVKYR MHRKMFIGKI IKALDIYQER LLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)