AT4G13670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plastid transcriptionally active 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
plastid transcriptionally active 5 (PTAC5); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, metabolic process; LOCATED IN: plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan binding-like (InterPro:IPR002477), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 835 Blast hits to 827 proteins in 285 species: Archae - 9; Bacteria - 385; Metazoa - 155; Fungi - 28; Plants - 81; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7948644..7950779 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44022.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.54 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSLPLSL PFPLRSLTST TRSLPFQCSP LFFSIPSSIV CFSTQNPDRE EVRWLREEQR WIREEQRWIR EEQRWIRERE SLLQEISDLQ LRIQSLESRN 101: SQLGNSIPDT ISNIAALLQV LKEKNRISES GLSATPMVLE STREQIVEEV EEEEKRVIIA EEKVRVSEPV KKIKRRILKV GSEGDDVQAL QEALLKLGFY 201: SGEEDMEFSS FSSGTASAVK TWQASLGVRE DGVMTAELLQ RLFMDEDVET DKDEASTMKK EEAGNGAVFT SVTQVPEKKQ SIVKDQSDRE VDVTQNRVFL 301: LGENRWEDPS RLIGRNKPVD RSESTNTKTR CITCRGEGRL MCLECDGTGE PNIEPQFMEW VGEDTKCPYC EGLGYTVCDV CDGKKNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)