AT4G13390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT5G06640.1); Has 154812 Blast hits to 45323 proteins in 1720 species: Archae - 310; Bacteria - 21282; Metazoa - 59302; Fungi - 26683; Plants - 23217; Viruses - 3952; Other Eukaryotes - 20066 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7783856..7785145 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 48314.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||
| Length | 429 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MISLRMKGLG HCLVYVVVFS VIAAIVTAYD SPSSTPQYTS PYPPKNYSPY LSESPPPPPP QYRRQEPKYT PHPEPNVYDS PTPLPYYFPF PKLDIKSPPP 101: PSVYTFSPPQ LYYSPSPKVE YKSPPPPYVY SSLPPLTYYS PSPKVIYNSP PPPYIYSSPP PPPYYSPSPK VDYKSPPPPY VYSSPPPPPY YSPSPKVEYK 201: SPPPPYVYSF PPPPPYYSPS PKVGYKSPPA PYVYSSPPPP PYYSPSPKVN YKSPPPPYVY SSPPPPPYSP SPKVEFKSPP PPYIYNSPPP PSYYSPSPKI 301: DYKSPPPPYV YSSPPPPTYY SPSPRVDYKS PPPPYVYNSL PPPYVYNSPP PPPYYSPSPT VNYKSPPPPY VYNSPPPPPY YSPFPKVEYK SPPPPYIYNS 401: PPPPPYYSPS PKITYKSPPP PYIYKTPYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)