AT4G09680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : conserved telomere maintenance component 1 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
conserved telomere maintenance component 1 (CTC1); Has 50 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6116819..6123017 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 142189.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||
| Length | 1274 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MENTTILTVK DLVNEGIAVT GASSLFSSAA SHSSSESTST NPKSHPGAVD SDFSRKFLTP LNYPTVIFGT VALPSETLKC PNRYCFRFTD GDLTICCDIL 0101: GFEFRAIGSK ICVLSWNFLP MNHSGGFLEI INWKFVDSGS LLSRCSGISS FPLIPSLYSS QNGDRKSRYS VCGVLESISP VSVVPCMDGV SSDSVNLPGF 0201: LVHVMACECK VYSRDAIDCG HAFERSVFVY FCGLEAASWH PVVMKLVGRN VALSGLKRKL VYVRGDSLLV FVTTENSVLH PPWLSKKGTV SKTVVDRRGN 0301: CGSYRGYVRG LYLKGKLVEM DEDVWLLLTD QILNRSHSIR TGSLIFIRNV HFVNTKFPWG EVLILGACFK TSITVEFFSP FETSCLVDSC RQTSLSLYVE 0401: SLSFPARLWT LLVRISFEKF NRMPSDKEIL RSCQKDELTK MYAESRIPPS MFQPRGGIFT EFCMHESCGC NSEARDCNLK LVMPISSFVH HVKVMLNELL 0501: SQIKKDFSAS DCLSHSSSTW KRYNNTNPKT LRSEDTGVIL LGRLKISSSG RLQLHDRTSS IDVLTPDLLS DRNASRICEV PDYYLIIEGI PESMLHMPFL 0601: KNPFRCSSVL NPTPLAIKNT LTVPFSLSLG TASCKHLLKH HPFDWRHDFN EFKEGFFHLF RVTHKFPILK NGHPGMPDCT SVFIEALVLP WDLICTVTEE 0701: EAAAPNFEEH DTSQEIRPHK RCKTNNGLQS QSFLSVPHEI SCQMTIRCAS SHCLVATATL SNLTENKSGK MHSAMRVLLE FIPECSNYYG LQIGGCYLMK 0801: HGSDDSFCVG RSGISNNDKI NFRPETRLWS LEFSFDEVLT HDGSMDVHPL VSSQPSFAVE QQNVSSRQPC SDVSLLLPYD AKGLFSVFLN DLEGLNKPLA 0901: AGKDNNNISC CTQSETIMHA EPSRLLPSNS LFPEGNLATF RGDVVAVDAV TSSVVDVSSS YCINVLVNHQ MVKIFGPLRR HSYLTGFGFG TNATFYRILG 1001: TGEQNSFVLT SASFIKINSR KALDSPPLEK PTHGAALCLP KITPQEFVPC ILAGPACNSF SGNEDNQQIK FACKQQVLSV YLLVLQTRSD DPSENECRNN 1101: IDIPLAGFVV DDGSSTYLCW TSGERAFTIL RLHEELPEET IDVVQWTRRY SNWGTTAYHL DQIVRVHKRI VMKCNGSQID VLFQDITIAV TSDQLLTKSE 1201: DKFLKWLILN AISGPIWEVA ASSMDMKMIE HLEREQCVEM ETSRYNLQSV WGNEVCQVDP LVRAWSLLQG LLNS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)