AT5G41150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Restriction endonuclease, type II-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ULTRAVIOLET HYPERSENSITIVE 1 (UVH1); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166), Restriction endonuclease, type II-like (InterPro:IPR011335), DNA repair nuclease, XPF-type/Helicase (InterPro:IPR020819); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16473044..16476919 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107641.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 956 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALKYHQQII SDLLEDSNGG LLILSSGLSL AKLIASLLIL HSPSQGTLLL LLSPAAQSLK SRIIHYISSL DSPTPTEITA DLPANQRYSL YTSGSPFFIT 101: PRILIVDLLT QRIPVSSLAG IFILNAHSIS ETSTEAFIIR IVKSLNSSAY IRAFSDRPQA MVSGFAKTER TMRALFLRKI HLWPRFQLDV SQELEREPPE 201: VVDIRVSMSN YMVGIQKAII EVMDACLKEM KKTNKVDVDD LTVESGLFKS FDEIVRRQLD PIWHTLGKRT KQLVSDLKTL RKLLDYLVRY DAVSFLKFLD 301: TLRVSESYRS VWLFAESSYK IFDFAKKRVY RLVKASDVKS KEHVKNKSGK KRNSKGETDS VEAVGGETAT NVATGVVVEE VLEEAPKWKV LREILEETQE 401: ERLKQAFSEE DNSDNNGIVL VACKDERSCM QLEDCITNNP QKVMREEWEM YLLSKIELRS MQTPQKKKQK TPKGFGILDG VVPVTTIQNS EGSSVGRQEH 501: EALMAAASSI RKLGKTTDMA SGNNNPEPHV DKASCTKGKA KKDPTSLRRS LRSCNKKTTN SKPEILPGPE NEEKANEAST SAPQEANAVR PSGAKKLPPV 601: HFYALESDQP ILDILKPSVI IVYHPDMGFV RELEVYKAEN PLRKLKVYFI FYDESTEVQK FEASIRRENE AFESLIRQKS SMIIPVDQDG LCMGSNSSTE 701: FPASSTQNSL TRKAGGRKEL EKETQVIVDM REFMSSLPNV LHQKGMKIIP VTLEVGDYIL SPSICVERKS IQDLFQSFTS GRLFHQVEMM SRYYRIPVLL 801: IEFSQDKSFS FQSSSDISDD VTPYNIISKL SLLVLHFPRL RLLWSRSLHA TAEIFTTLKS NQDEPDETRA IRVGVPSEEG IIENDIRAEN YNTSAVEFLR 901: RLPGVSDANY RSIMEKCKSL AELASLPVET LAELMGGHKV AKSLREFLDA KYPTLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)