AT4G01860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 18202 Blast hits to 10734 proteins in 529 species: Archae - 38; Bacteria - 4707; Metazoa - 5622; Fungi - 3824; Plants - 1793; Viruses - 0; Other Eukaryotes - 2218 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:801713..808018 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 144757.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.83 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1308 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEENSRRKW NPHAGPYLGE VSSLAFLNLP QHVSSIPYLL AGSGSEILLY DLSSGELIRS FQVFEGVRVH GTVCSKSFVH SAERYTYKLV IFGEKKVKIF 0101: SLIVELASSS GEISVNLENF ESLPRLSNWV FDVCFLQDST GSLEEEDKLL AIGCSDNSLS IWDVKESRMA FEIQSPERCL LYTMRLWGDS ISTLRIASGT 0201: IFNEIIVWRA VGLDGDNVDH GHYSASHMLR LTGHEGSIFR IVWSLDGSKI VSVSDDRSAR IWEIDSQEVV GPVLFGHSVR VWDCCISDSL IVTAGEDCTC 0301: RVWGVDGTQL EVIKEHIGRG IWRCLYDPNS SLLVTAGFDS AIKVHQLHNR GSETSLDAVG VLNSPDKLEY FSTCLPNSTK HTGLTDSKSE YVRCLQFTQE 0401: DTIYVATNHG CLYHARLLSS GNVRWTELVR IPEEGPIITM DVMSGGKVRE SCALDDWVAL GDGKGNMTIV RVIGDMYNPH AGLNQSWKAS PERQLLGAFW 0501: CKSLGYRFVF SCNPRGLLKL WKLSGSLESA AETYDVSLLA EFSSGFGKRI MCVDASVEDE VILCGDLRGN ITLFPLTKDM LHGVSVSSEL KIPSLKYFKG 0601: AHGISTVSSL SVARLTSNKA EICSTGADGC ICYFEYDREM QTLEFMGLKQ LKELNLVQSV CQGVQFSEDH PNNDYAAGFA STDFILWNLT AETKVTQISC 0701: GGWRRPHSFY LGEIPEWQNC FAYVKDDVIH IHRHWVGGQK TKVFPLNLHT QFHGRELHSL CFISTDTKAG FDSEESKISD RSSWIATGCE DGSVRLSRYA 0801: SEFGNWSTSE LLGEHVGGSA VRSVCCVSNM HMMSSDVPNL PDMCDQDYAV DDCESPRLLI SVGAKRVVTS WLLRNGRHKK KGESCISDNG HNRASSEVSP 0901: VTFQWLATDM PTKYRPCGKI EKSPKLEGVE EDTSANVTKL GSNTYNEREN YEDDWRYMAA TAFLVKCVGS RLTICFIAVA CSDATLTLRA LVLPHRLWFD 1001: VASLVPLKSP VLSLQHAVVP LDPPHEGNTP YSDVYLLISG ATDGSIGFWD VTKCVEAFVK QVSSIHIEKY IDCQLRPRTG RGSQGGRKWK LLGSKISKRA 1101: QENSNSVGEA AEEDPASSLE LTNDHPQENG KNEDADSLPE TSEIKTSHVV KNAHQSGVNC LHVSRSNSSP SYGNGLMFNV ISGGDDQALH CLSFNILSSS 1201: NNRATISEIM DLNQTPSYRI MLTDRGGIAS AHSSAIKGVW MDTNWVFSTG LDQRVRCWFL EKDGKLIEHA HIVISVPEPE ALDAKAIDEN RYQIAVAGRG 1301: IQMVEFSG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)