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AT3G45900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease P protein subunit P38-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease P protein subunit P38-related; BEST Arabidopsis thaliana protein match is: Ribonuclease P protein subunit P38-related (TAIR:AT5G53020.1); Has 1049 Blast hits to 987 proteins in 199 species: Archae - 26; Bacteria - 115; Metazoa - 530; Fungi - 58; Plants - 90; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH1IeggNOG:ENOG410YC5EEMBL:BT014753EMBL:CP002686EnsemblPlants:AT3G45900EnsemblPlants:AT3G45900.1entrez:823733
GeneID:823733Gramene:AT3G45900.1hmmpanther:PTHR21596hmmpanther:PTHR21596:SF8HOGENOM:HOG000240564IntAct:Q6IDC0KEGG:ath:AT3G45900
ncoils:CoilOMA:MKHFVPRPhylomeDB:Q6IDC0Proteomes:UP000006548RefSeq:NP_190176.2STRING:3702.AT3G45900.1TAIR:AT3G45900
UniGene:At.35977UniProt:Q6IDC0
Coordinates (TAIR10) chr3:-:16874566..16875984
Molecular Weight (calculated) 45345.60 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.80
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKPEEEEER LRMRSFVEEE KEHDELKKLA KSFLVLSFSV MLAHLPNDAI SLVPRLTSQV TELKRRLATA EEQVRQMKSR RVEDSKANAR VVEIFASHRN
101: AWQEEEKRLL NRIHEIEEER EDFMNRISEL EREVSERDEM IGFMSRREIE EEDDDDGQGD ESSERYAVDH LTLSSSPSPN AYGNFNPFQD LQYESLESVY
201: RMKHFVPRRE SPWKIDSEGT GVSAKLRLLE EELLNLEKVC RPSDISKVPS LLKKQAKRYQ ALSGKIDDLC RRMQSSDPCD ATLGPEFRTQ RQNEFLLECF
301: RLQQRASETG QKLVSLQTEI TRSNQGDQLS QAKMNTGRSL DLIKNNLKEV QRNLEIWLAR IIGDLEGILA RDGASRVREF YVARYPFVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)