AT1G67440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Minichromosome maintenance (MCM2/3/5) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1688 (emb1688); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), EngC GTPase (InterPro:IPR010914), GTPase EngC (InterPro:IPR004881); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G67460.1); Has 5395 Blast hits to 5393 proteins in 2047 species: Archae - 18; Bacteria - 4575; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25263905..25265551 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49157.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRAKHIGKN YSSSLSPVLS PEHKPSLLES QAIGTVATAQ ANFMRVIVQD VANSVTSDDD NDSSKTGVEL LCVVRAVLKK IRRRVLVGDK VLVGSIDWVD 101: RRGMIENVFH RRSEILDPPV ANVDHLLVLF SLDQPKLEPF TLTRFLVEAE STRIPLTLAL NKTELISEEE LETWKIRLRG WNYEPLFCSV GTKDGLDDIA 201: FVLRDQTSVI VGPSGVGKSS LINVLRSNHG GGVVEDENWF EPMLGNKWFD DQRVGEVSSR SGRGKHTTRN VSLLPVSEGG YLADTPGFNQ PSLLKVTKHS 301: LAHCFPEIRN MIESEKCGFR DCLHIGEPGC VVKGDWERYP YYLQLLDEIR IREEFQLRTF GTKREDDVRY KVGDMGVKHA EPRLMPKKHR RESRKKTKQT 401: MISELDEFED EDSDLYIEND PIVQAIENEN KRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)