AT5G07670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.575 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G51380.1); Has 3082 Blast hits to 1820 proteins in 183 species: Archae - 0; Bacteria - 20; Metazoa - 1308; Fungi - 229; Plants - 1264; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2430421..2432065 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52995.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSYNTGKESS PVSPLKKRRA SWSELWVNHH HLLSSSPLDL AAKFQSLTPP ISKSKTLLPD FTLLLPDLIL IRVIQKIPNS QRKNLSLVCK RWFRLHGRLV 101: RSFKVSDWEF LSSGRLISRF PNLETVDLVS GCLISPPNLG ILVNHRIVSF TVGVGSYQSW SFFEENLLSV ELVERGLKAL AGGCSNLRKL VVTNTSELGL 201: LNVAEECSRL QELELHKCSD SVLLGIGAFE NLQILRLVGN VDGLYNSLVS DIGLMILAQG CKRLVKLELV GCEGGFDGIK EIGECCQMLE ELTVCDNKME 301: SGWLGGLRYC ENLKTLKLVS CKKIDNDPDE SLSCCCPALE RLQLEKCQLR DKNTVKALFK MCEAAREIVF QDCWGLDNDI FSLAMAFGRV KLLYLEGCSL 401: LTTSGLESVI LHWHELEHLK VVSCKNIKDS EVSPSLSALF SALVELQWRP DTRSHLSSSL TGTGIGEKGG KFFKKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)