suba logo
AT3G16310.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : mitotic phosphoprotein N' end (MPPN) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mitotic phosphoprotein N' end (MPPN) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MPPN (InterPro:IPR007846), Nucleoporin, NUP53 (InterPro:IPR017389); Has 220 Blast hits to 220 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 5; Plants - 57; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:6212eggNOG:ENOG4111AREeggNOG:KOG4285EMBL:AB023046EMBL:AC001645EMBL:AY070444EMBL:AY086937
EMBL:BT002339EMBL:CP002686EnsemblPlants:AT3G16310EnsemblPlants:AT3G16310.1entrez:820878GeneID:820878Genevisible:O04326
GO:GO:0000166GO:GO:0005643GO:GO:0015031GO:GO:0031965GO:GO:0051028GO:GO:0055085Gramene:AT3G16310.1
hmmpanther:PTHR21527HOGENOM:HOG000005837InParanoid:O04326IntAct:O04326InterPro:IPR007846InterPro:IPR012677InterPro:IPR017389
iPTMnet:O04326KEGG:ath:AT3G16310KO:K14313OMA:MDLMFGLPaxDb:O04326Pfam:O04326Pfam:PF05172
Pfscan:PS51472PhylomeDB:O04326PIRSF:PIRSF038119PRIDE:O04326PRO:PR:O04326PROSITE:PS51472ProteinModelPortal:O04326
Proteomes:UP000006548RefSeq:NP_566542.1SMR:O04326STRING:3702.AT3G16310.1SUPFAM:SSF54928TAIR:AT3G16310UniGene:At.6084
UniProt:O04326
Coordinates (TAIR10) chr3:-:5526593..5528106
Molecular Weight (calculated) 35431.80 Da
IEP (calculated) 10.06
GRAVY (calculated) -0.54
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)