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AT3G08680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14506206
AmiGO : plasma membrane 17317660
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 14506206
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16287169 (2006): extracellular region
  • PMID:15308754 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G58300.2); Has 128832 Blast hits to 96760 proteins in 3128 species: Archae - 71; Bacteria - 9985; Metazoa - 33545; Fungi - 6918; Plants - 64071; Viruses - 347; Other Eukaryotes - 13895 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G08680-MONOMERBioCyc:ARA:GQT-1682-MONOMERBioGrid:5350eggNOG:ENOG410JXFCeggNOG:ENOG411040XEMBL:AC012562EMBL:AY057485
EMBL:BT000497EMBL:CP002686EnsemblPlants:AT3G08680EnsemblPlants:AT3G08680.1EnsemblPlants:AT3G08680.2entrez:820015ExpressionAtlas:Q9C9Y8
Gene3D:3.80.10.10GeneID:820015Genevisible:Q9C9Y8GO:GO:0004672GO:GO:0005524GO:GO:0005886GO:GO:0009505
GO:GO:0009506GO:GO:0016021Gramene:AT3G08680.1Gramene:AT3G08680.2hmmpanther:PTHR27008hmmpanther:PTHR27008:SF22HOGENOM:HOG000116554
InParanoid:Q9C9Y8InterPro:IPR000719InterPro:IPR001245InterPro:IPR011009InterPro:IPR013210InterPro:IPR017441InterPro:IPR032675
iPTMnet:Q9C9Y8KEGG:ath:AT3G08680ncoils:CoilOMA:MEEIRPSPaxDb:Q9C9Y8Pfam:PF07714Pfam:PF08263
Pfam:Q9C9Y8Pfscan:PS50011PhylomeDB:Q9C9Y8PRIDE:Q9C9Y8PRO:PR:Q9C9Y8PROSITE:PS00107PROSITE:PS50011
ProteinModelPortal:Q9C9Y8Proteomes:UP000006548RefSeq:NP_187480.1RefSeq:NP_974257.1scanprosite:PS00107SMR:Q9C9Y8STRING:3702.AT3G08680.1
SUPFAM:SSF52058SUPFAM:SSF56112SwissPalm:Q9C9Y8TAIR:AT3G08680TMHMM:TMhelixUniGene:At.22405UniProt:C0LGM8
UniProt:Q9C9Y8
Coordinates (TAIR10) chr3:+:2638591..2640590
Molecular Weight (calculated) 69410.40 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.14
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKIIAAFLF LLVTTFVSRC LSADIESDKQ ALLEFASLVP HSRKLNWNST IPICASWTGI TCSKNNARVT ALRLPGSGLY GPLPEKTFEK LDALRIISLR
101: SNHLQGNIPS VILSLPFIRS LYFHENNFSG TIPPVLSHRL VNLDLSANSL SGNIPTSLQN LTQLTDLSLQ NNSLSGPIPN LPPRLKYLNL SFNNLNGSVP
201: SSVKSFPASS FQGNSLLCGA PLTPCPENTT APSPSPTTPT EGPGTTNIGR GTAKKVLSTG AIVGIAVGGS VLLFIILAII TLCCAKKRDG GQDSTAVPKA
301: KPGRSDNKAE EFGSGVQEAE KNKLVFFEGS SYNFDLEDLL RASAEVLGKG SYGTTYKAIL EEGTTVVVKR LKEVAAGKRE FEQQMEAVGR ISPHVNVAPL
401: RAYYFSKDEK LLVYDYYQGG NFSMLLHGNN EGGRAALDWE TRLRICLEAA RGISHIHSAS GAKLLHGNIK SPNVLLTQEL HVCVSDFGIA PLMSHHTLIP
501: SRSLGYRAPE AIETRKHTQK SDVYSFGVLL LEMLTGKAAG KTTGHEEVVD LPKWVQSVVR EEWTGEVFDV ELIKQQHNVE EEMVQMLQIA MACVSKHPDS
601: RPSMEEVVNM MEEIRPSGSG PGSGNRASSP EMIRSSDSPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)