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AT1G76020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G20225.1); Has 151 Blast hits to 149 proteins in 52 species: Archae - 0; Bacteria - 54; Metazoa - 12; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G76020EnsemblPlants:AT1G76020.1entrez:843933GO:GO:0005773hmmpanther:PTHR33875hmmpanther:PTHR33875:SF2Pfam:PF13462
Proteomes:UP000006548TAIR:AT1G76020UniGene:At.34712UniProt:A0JQ12
Coordinates (TAIR10) chr1:-:28532243..28533542
Molecular Weight (calculated) 25256.30 Da
IEP (calculated) 8.43
GRAVY (calculated) 0.00
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRAVLLFLV FVVETRVQAQ LVPPVRQDGF VYPPGHRFDP DTILIEAYFD PVCPDSRDSW PPLKQALHHY GSRVALLLHL LPLPYHDNAY VTSRALHIVN
101: TVHANATFSL LEGFFKHQSL FYNAQTQLLS RPAVVEKIVE LGTVSLGNSY QSVLKSGFSD KKSDRATRVS FKYSASRGVY GTPTFYVNGF VLSDAASPSN
201: FGGWKKIIDP LVQAHEMEDN FIPFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)