AT1G13250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.521 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : galacturonosyltransferase-like 3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with putative galacturonosyltransferase activity. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4528965..4530002 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39854.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.67 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSLRLRLCL LLLLPITISC VTVTLTDLPA FREAPAFRNG RECSKTTWIP SDHEHNPSII HIAMTLDAIY LRGSVAGVFS VLQHASCPEN IVFHFIATHR 101: RSADLRRIIS STFPYLTYHI YHFDPNLVRS KISSSIRRAL DQPLNYARIY LADLLPIAVR RVIYFDSDLV VVDDVAKLWR IDLRRHVVGA PEYCHANFTN 201: YFTSRFWSSQ GYKSALKDRK PCYFNTGVMV IDLGKWRERR VTVKLETWMR IQKRHRIYEL GSLPPFLLVF AGDVEPVEHR WNQHGLGGDN LEGLCRNLHP 301: GPVSLLHWSG KGKPWLRLDS RRPCPLDSLW APYDLFRYSP LISDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)