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AT1G51890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23990937 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G51860.1); Has 132319 Blast hits to 120399 proteins in 4470 species: Archae - 103; Bacteria - 13631; Metazoa - 43547; Fungi - 9956; Plants - 47012; Viruses - 341; Other Eukaryotes - 17729 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G51890-MONOMEREC:2.7.11.1eggNOG:COG0515eggNOG:ENOG410J721EMBL:AC015448EMBL:CP002684EMBL:FJ708655
EnsemblPlants:AT1G51890EnsemblPlants:AT1G51890.1entrez:841616Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:841616Genevisible:C0LGG6
GO:GO:0004674GO:GO:0005524GO:GO:0005886GO:GO:0016021GO:GO:0042742hmmpanther:PTHR27003hmmpanther:PTHR27003:SF44
HOGENOM:HOG000116550InParanoid:C0LGG6InterPro:IPR000719InterPro:IPR001245InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR017441InterPro:IPR024788InterPro:IPR025875InterPro:IPR032675iPTMnet:C0LGG6KEGG:ath:AT1G51890OMA:MTEFATN
PaxDb:C0LGG6Pfam:C0LGG6Pfam:PF07714Pfam:PF12799Pfam:PF12819Pfam:PF13855Pfscan:PS50011
PIR:D96558PRIDE:C0LGG6PRO:PR:C0LGG6PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:C0LGG6
Proteomes:UP000006548RefSeq:NP_001185201.1RefSeq:NP_175601.2scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMR:C0LGG6
STRING:3702.AT1G51890.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G51890TMHMM:TMhelixUniGene:At.49312UniProt:C0LGG6
Coordinates (TAIR10) chr1:-:19274802..19278528
Molecular Weight (calculated) 98568.30 Da
IEP (calculated) 6.47
GRAVY (calculated) -0.25
Length 876 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFLSFLIFV FAVLGLVQAQ DQSGFISLDC GLVPTEITYV EKSTNITYRS DATYIDSGVP GKINEVYRTQ FQQQIWALRS FPEGQRNCYN FSLTAKRKYL
101: IRGTFIYGNY DGLNQLPSFD LYIGPNKWTS VSIPGVRNGS VSEMIHVLRQ DHLQICLVKT GETTPFISSL ELRPLNNNTY VTKSGSLIVV ARLYFSPTPP
201: FLRYDEDVHD RIWIPFLDNK NSLLSTELSV DTSNFYNVPQ TVAKTAAVPL NATQPLKINW SLDDITSQSY IYMHFAEIEN LEANETREFN ITYNGGENWF
301: SYFRPPKFRI TTVYNPAAVS SLDGNFNFTF SMTGNSTHPP LINGLEIYQV LELPQLDTYQ DEVSAMMNIK TIYGLSKRSS WQGDPCAPEL YRWEGLNCSY
401: PNFAPPQIIS LNLSGSNLSG TITSDISKLT HLRELDLSNN DLSGDIPFVF SDMKNLTLIN LSGNKNLNRS VPETLQKRID NKSLTLIRDE TGKNSTNVVA
501: IAASVASVFA VLVILAIVFV VIRKKQRTNE ASGPRSFTTG TVKSDARSSS SSIITKERKF TYSEVLKMTK NFERVLGKGG FGTVYHGNLD DTQVAVKMLS
601: HSSAQGYKEF KAEVELLLRV HHRHLVGLVG YCDDGDNLAL IYEYMEKGDL RENMSGKHSV NVLSWETRMQ IAVEAAQGLE YLHNGCRPPM VHRDVKPTNI
701: LLNERSQAKL ADFGLSRSFP VDGESHVMTV VAGTPGYLDP EYYRTNWLSE KSDVYSFGVV LLEIVTNQPV MNKNRERPHI NEWVMFMLTN GDIKSIVDPK
801: LNEDYDTNGV WKVVELALAC VNPSSSRRPT MPHVVMELNE CLALEIERKQ GSQATYIKES VEFSPSSASD FSPLAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)