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AT1G30010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Intron maturase, type II family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT5G46920.1); Has 4269 Blast hits to 4093 proteins in 800 species: Archae - 33; Bacteria - 3762; Metazoa - 5; Fungi - 54; Plants - 249; Viruses - 3; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPX1eggNOG:ENOG410Y11EEMBL:AC022455EMBL:CP002684EnsemblPlants:AT1G30010EnsemblPlants:AT1G30010.1entrez:839880
GeneID:839880GO:GO:0000374GO:GO:0005739GO:GO:0006397GO:GO:0009845GO:GO:0010228GO:GO:0040007
GO:GO:0090351Gramene:AT1G30010.1hmmpanther:PTHR34047hmmpanther:PTHR34047:SF2HOGENOM:HOG000243591InterPro:IPR024937KEGG:ath:AT1G30010
OMA:CDYTPFPPfam:PF01348PhylomeDB:Q9C8R8PIR:A86424Proteomes:UP000006548RefSeq:NP_174294.1STRING:3702.AT1G30010.1
SUPFAM:SSF56672TAIR:AT1G30010UniGene:At.24783UniGene:At.73038UniProt:Q9C8R8
Coordinates (TAIR10) chr1:+:10513194..10515329
Molecular Weight (calculated) 81541.00 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.49
Length 711 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRLTYPLSS LRNIVEHFHC NTFHKPISSL SISPTLKSES REPSSTQDPY SLLKQDPVDI CLSLWVKSFS SPPSATFSNL TGFLSKFDLW VLAYQRTCAH
101: VTGTFPPRNA IHANALRSLL SLQNAVTRSG GKFRWNDKMN QYVRSPKDKI SMNGGEGMSK GKVRRIIESE EPIFQDRVVH EVLLMILEPF FEARFSSKSH
201: GFRPGRNPHT VIRTIRSNFA GYLWFMKGDV SEMLDHVDVD VVMNCLQKVV KDRKVLGLIE SSLKFSDKRV LKRVVEKHGN DNGLGTKRRI EREKRNKTKK
301: KILSDDEPKP DPYWLRTFYS FAPKEAAKVP SYGYCGVLSP LLANVCLNEL DRFMETKIVE YFSPCKDDSI WKESIEDGCH NPAWPEFVPS SGKEKTRKMD
401: YIRYGGHFLI GIRGPREDAV KMRKEIIDFC DRVFGVRLDN SKLEIEHISR GIQFLDHIIC RRVIYPTLRY TGSGGSIVSK KGVGTLLSVS ASLEQCIRQF
501: RRLAFVKGDK DPEPLPCNPM LYSSQSHSNS QMNKFLETMA DWYKYADNRK KAVGFCAYVI RSSLAKLYAA RYRLKSRAKV YSIASRDLSH PLSESSNNSA
601: PEYSDLLRMG LVDAIEGVQF SRMSLIPSCD YTPFPRNWIP NHEQVLQEYI RLQDPKFFCG LHRSIKREGL TLPQDEISEA VWDFKTLGAW RSKYENKREA
701: DDGLQKLDSQ T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)