AT2G40720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 52244 Blast hits to 13768 proteins in 266 species: Archae - 0; Bacteria - 9; Metazoa - 106; Fungi - 105; Plants - 51420; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16987269..16989851 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95398.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 860 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFKLHDVHI RRGLCCVADS YISPASINSG IRALIQKGEY LQALHLYSKH DGSSPFWTSV FTFPSLLKAC SALTNLSYGK TIHGSVVVLG WRYDPFIATS 101: LVNMYVKCGF LDYAVQVFDG WSQSQSGVSA RDVTVWNSMI DGYFKFRRFK EGVGCFRRML VFGVRPDAFS LSIVVSVMCK EGNFRREEGK QIHGFMLRNS 201: LDTDSFLKTA LIDMYFKFGL SIDAWRVFVE IEDKSNVVLW NVMIVGFGGS GICESSLDLY MLAKNNSVKL VSTSFTGALG ACSQSENSGF GRQIHCDVVK 301: MGLHNDPYVC TSLLSMYSKC GMVGEAETVF SCVVDKRLEI WNAMVAAYAE NDYGYSALDL FGFMRQKSVL PDSFTLSNVI SCCSVLGLYN YGKSVHAELF 401: KRPIQSTSTI ESALLTLYSK CGCDPDAYLV FKSMEEKDMV AWGSLISGLC KNGKFKEALK VFGDMKDDDD SLKPDSDIMT SVTNACAGLE ALRFGLQVHG 501: SMIKTGLVLN VFVGSSLIDL YSKCGLPEMA LKVFTSMSTE NMVAWNSMIS CYSRNNLPEL SIDLFNLMLS QGIFPDSVSI TSVLVAISST ASLLKGKSLH 601: GYTLRLGIPS DTHLKNALID MYVKCGFSKY AENIFKKMQH KSLITWNLMI YGYGSHGDCI TALSLFDEMK KAGESPDDVT FLSLISACNH SGFVEEGKNI 701: FEFMKQDYGI EPNMEHYANM VDLLGRAGLL EEAYSFIKAM PIEADSSIWL CLLSASRTHH NVELGILSAE KLLRMEPERG STYVQLINLY MEAGLKNEAA 801: KLLGLMKEKG LHKQPGCSWI EVSDRTNVFF SGGSSSPMKA EIFNVLNRLK SNMVDEDKAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)