AT5G61950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24873566..24878093 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129330.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 1132 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSFKKDVM AERLYKDAED LIAKGNHIKA LEILEDLISI HWNANDAWLL HIEQGNVFVD LAEKAEDRDM EVAYLLGCVA CFSQHVTVFE LCAQSLFMLG 0101: RNLASVSHYK KCLKKAREAL SDSNSKKLSS STPVAFRAIV SRKKKDLEGF IEDAESMIAA SKTSPLQKPE PKVRDPEKTP EPSKDDFQRF RSYWVGLDVK 0201: IKRDFLKVSI AKLTSFVGGI RKRKAQEALE QALASKKDRK WTFWMCRTKC SKRCSSVEEC RKHFEQQHDA DFKPSSEKDI VKRIGNNWAR KISLGGWEPV 0301: DAVAAVEMIK NQLADVKAFA SKSKNGWSYE WPLAVDEERK QLLQEIKLLL VSFCELKILS GSMRDWVMHF PVKYLAKLEV SKQGLIDSHL SETPQSICFL 0401: ECHELTRILD FLKTIKCKRN DGTDQVCTAV DSVLGRIQVK VKIDFDPQFS FLLLDKRLLK INDVQFDDDE GTINVLDPSA HYAKAPVHGD DIISWLTDYN 0501: SVDKTFPRPI REHNLDIWLA VLKAVQFTCR TLGNKYAKKV QVVDYDAALT DVENMCVSEN ERRKNLPEDQ WSRYASLLCD VCEERVPKNS LTTKLFVRAV 0601: RDVFEGALHP TLDFLDLEDC LNFIREHKSL SDDKVLQAID LLKSVVTQKV LLMDTKILLI DNSRISLLNN LTRLSAFDNR TYILQLLKPF LLNEIVNMES 0701: KAKSDAAEAD LLNELEKEKL QPKEKPQSKE KPQSKKRRDR TKKKPSTSIS SLLDKTVEHK PESTSPSLRT VEEDSMEPED ALASETGRLE ISSKTEIQEE 0801: ATKDDPDMHS RHGEDPLSDH LESAAGEAAA RYNSALDMTL KALLSIKIFK EDLMQNSQQI QDQRQEQVPT ALQNLFTAVV SEAIQDEGVY SCLLSDFLTS 0901: QEEFLSMSSD AAKVVVAVLN LWRCWKNPER ESLVTRLFTL VENKRMSCRK CRRITNSPVQ SSYGIVMAAD SIRELKCAFG NIKFVDILKL IRLGYKMLCD 1001: NKKGGCGKKS YVDHIIRRCP PIFTIVLEWE KSETEKEISE TTKALDWEID ISRLYEEGLE TNTNYRLVSM VGCGEGEEEH VCLAYEKNRW VNLRRECFAG 1101: EDVGDWKNVV RFCGERKVRP EILIYESVRL MA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)